Datasets
- 1 - 25 out of 142 results
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Profile hidden Markov models trained on aligned KEGG Orthology sequences for enzyme annotation
Rodenburg, Y. A. (Creator), de Ridder, D. (Contributor), Govers, F. (Contributor) & Seidl, M. F. (Creator), Wageningen University & Research, 7 Oct 2019
DOI: 10.4121/uuid:9b6e6aa0-b815-409f-9e96-04828b03290b
Dataset
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Single-molecule protein sequencing through fingerprinting: computational assessment
Yao, Y. (Creator), Docter, M. W. (Creator), van Ginkel, H. G. T. M. (Creator), de Ridder, D. (Creator) & Joo, C. (Creator), TU Delft, 19 Jan 2018
DOI: 10.4121/uuid:08a078fc-9d4c-44d1-88c9-9cb412b83a46
Dataset
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Parental Effects on Seed Transcriptome-Metabolome
He, H. (Creator), Willems, L. (Creator), Batushansky, A. (Creator), Fait, A. (Creator), Hanson, J. (Creator), Nijveen, H. (Creator), Hilhorst, H. (Creator) & Bentsink, L. (Creator), Wageningen University, 1 Jan 2016
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE75837
Dataset
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Data from: Microbial and volatile profiling of soils suppressive to Fusarium culmorum of wheat
Ossowicki, A. (Contributor), Tracanna, V. (Contributor), Petrus, M. L. C. (Contributor), van Wezel, G. (Contributor), Raaijmakers, J. M. (Contributor), Medema, M. H. (Contributor) & Garbeva, P. (Contributor), Wageningen University & Research, 26 Feb 2020
Dataset
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Dataset: 295,416 RiPP BGCs from BiG-FAM version 1.0
Kautsar, S. (Creator), Wageningen University & Research, 19 Oct 2020
DOI: 10.5281/zenodo.4106679, https://bigfam.bioinformatics.nl
Dataset
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Olfactomedin 4 serves as a marker for disease severity in pediatric Respiratory Syncytial Virus (RSV) infection
Brand, K. H. (Creator), Ahout, I. M. (Creator), de Ridder, D. (Creator), van Diepen, A. (Creator), Li, Y. (Creator), Zaalberg, M. (Creator), Andeweg, A. (Creator), Roeleveld, N. (Creator), de Groot, R. (Creator), Warris, A. (Creator), Hermans, P. W. (Creator), Ferwerda, G. (Creator) & Staal, F. J. (Creator), Wageningen University, 6 Jun 2015
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE69606
Dataset
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From mass spectral features to molecules in molecular networks: MolNotator LDB dataset.
Olivier-Jimenez, D. (Creator), Bouchouireb, Z. (Creator), Ollivier, S. (Creator), Mocquard, J. (Creator), Allard, P.-M. (Creator), Bernadat, G. (Creator), Chollet-Krugler, M. (Creator), Rondeau, D. (Creator), Boustie, J. (Creator), van der Hooft, J. (Creator) & Wolfender, J.-L. (Creator), University of Rennes, 16 Dec 2021
Dataset
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GNPS - Stool (fecal) HILIC LC-MS/MS and LC-MS POS mode data from clinical cohort - used for MS2LDA substructure discovery
van der Hooft, J. (Creator), Wageningen University, 2020
DOI: 10.25345/c5zd70
Dataset
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Metagenomic Screening of ancient DNA from a Late Medieval mass burial site in Lübeck, Northern Germany, revealed occurence of S. Paratyphi C.
Haller, M. (Creator), Callan, K. (Creator), Susat, J. (Creator), Flux, A. L. (Creator), Immel, A. (Creator), Franke, A. (Creator), Herbig, A. (Creator), Krause, J. (Creator), Kupczok, A. (Creator), Fouquet, G. (Creator), Hummel, S. (Creator), Rieger, D. (Creator), Nebel, A. (Creator) & Krause-Kyora, B. (Creator), Kiel University, 1 Mar 2021
https://www.ebi.ac.uk/ena/browser/view/PRJEB41353
Dataset
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Natural Products Atlas (NPAtlas) MetFrag Local CSV
van der Hooft, J. (Creator) & Schymanski, E. L. (Creator), Wageningen University & Research, 1 Aug 2024
Dataset
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The Natural Products Atlas - data download
Van Santen, J. A. (Creator), Jacob, G. (Creator), Singh, A. L. (Creator), Aniebok, V. (Creator), Balunas, M. J. (Creator), Bunsko, D. (Creator), Neto, F. C. (Creator), Castaño-Espriu, L. (Creator), Chang, C. (Creator), Clark, T. N. (Creator), Cleary Little, J. L. (Creator), Delgadillo, D. A. (Creator), Dorrestein, P. C. (Creator), Duncan, K. R. (Creator), Egan, J. M. (Creator), Galey, M. M. (Creator), Haeckl, J. (Creator), Hua, A. (Creator), Hughes, A. H. (Creator), Iskakova, D. (Creator), Khadilkar, A. (Creator), Lee, J. H. (Creator), Lee, S. (Creator), Legrow, N. (Creator), Liu, D. Y. (Creator), Macho, J. M. (Creator), McCaughey, C. S. (Creator), Medema, M. H. (Creator), Neupane, R. P. (Creator), O'Donnell, T. J. (Creator), Paula, J. S. (Creator), Sanchez, L. M. (Creator), Shaikh, A. F. (Creator), Soldatou, S. (Creator), Terlouw, B. R. (Creator), Tran, T. A. (Creator), Valentine, M. (Creator), Van Der Hooft, J. J. J. (Creator), Vo, D. A. (Creator), Wang, M. (Creator), Wilson, D. (Creator), Zink, K. E. (Creator) & Linington, R. G. (Creator), Wageningen University, 19 May 2021
Dataset
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Data for iPRESTO: automated discovery of biosynthetic sub-clusters linked to specific natural product substructures
Louwen, J. J. R. (Creator), Kautsar, S. A. (Creator), van der Burg, S. (Creator), Medema, M. H. (Creator) & van der Hooft, J. J. J. (Creator), Wageningen University & Research, 2 Aug 2022
Dataset
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Cleaned and pre-processed MS/MS datset (build from all positive ionmode spectra in GNPS) - zip file
Huber, F. (Creator), Ridder, L. (Creator), Verhoeven, S. (Creator), Spaaks, J. H. (Creator), Diblen, F. (Creator), Rogers, S. (Creator) & van der Hooft, J. (Creator), Netherlands eScience Center, 10 Aug 2020
Dataset
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Micromonospora sp. RL09-050-HVF-A Genome sequencing and assembly
McCaughey, C. S. (Creator), van Santen, J. A. (Creator), van der Hooft, J. J. J. (Creator), Medema, M. H. (Creator) & Linington, R. G. (Creator), Simon Fraser university, 27 Jul 2021
https://www.ncbi.nlm.nih.gov/bioproject/718589
Dataset
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SBfI RADseq of Teleogryllus oceanicus F3 cross between Daintree and Kailua flat-wing crickets
Pascoal, S. (Creator), Risse, J. (Creator), Zhang, X. (Creator), Blaxter, M. (Creator), Cezard, T. (Creator), Gharbi, K. (Creator), Hunt, J. (Creator), Kumar, S. (Creator), Langan, E. (Creator), Liu, X. (Creator), Rayner, J. G. (Creator), Ritchie, M. G. (Creator), Snoek, B. (Creator), Trivedi, U. (Creator) & Bailey, N. W. (Creator), Wageningen University, 22 Jan 2019
https://www.ebi.ac.uk/ena/data/view/PRJEB29921
Dataset
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D.chry2.2 assembly
Singh, K. (Creator), De-Kayne, R. (Creator), Omufwoko, K. S. (Creator), Martins, D. J. (Creator), Bass, C. (Creator), Ffrench-Constant, R. (Creator) & Martin, S. H. (Creator), University of Edinburgh, 2 Oct 2021
https://www.ncbi.nlm.nih.gov/bioproject/PRJEB47812
Dataset
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data
Farooq, M. (Creator), Wageningen University & Research, 1 Jul 2022
DOI: 10.6084/m9.figshare.20209700
Dataset
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Transposon insertion polymorphisms in tomato cultivars: Supporting Information
Demirci, S. (Creator), Wageningen University & Research, 13 Jun 2021
Dataset
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Supplemental Dataset for Automated genome mining predicts combinatorial diversity and taxonomic distribution of peptide metallophore structures
Reitz, Z. (Creator), Wageningen University & Research, 14 Dec 2022
Dataset
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RNAseq of Salvia dorisiana plant parts
Jongedijk, E. (Creator), Müller, S. (Creator), Van Dijk, A. D. J. (Creator), Schijlen, E. (Creator), Champagne, A. (Creator), Boutry, M. (Creator), Levisson, M. (Creator), Van Der Krol, S. (Creator), Bouwmeester, H. (Creator) & Beekwilder, J. (Creator), Wageningen University & Research, 23 Mar 2018
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE112263
Dataset
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Whole-genome amplification (WGA) create specific chimeric fragments, which consist mainly of palindrome sequences. We developed the tool Pacasus to detect and correct these palindromic sequences in long reads, for example from PacBio and Nanopore
Warris, S. (Creator), Schijlen, E. G. W. M. (Creator), van de Geest, H. C. (Creator), Vegesna, R. (Creator), Hesselink, T. (Creator), te Lintel Hekkert, B. (Creator), Sanchez Perez, G. F. (Creator), Medvedev, P. (Creator), Makova, K. D. (Creator) & de Ridder, D. (Creator), Wageningen UR, 31 Jul 2017
https://www.ebi.ac.uk/ena/data/view/PRJEB21791
Dataset
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Disentangling the genetic basis of rhizosphere microbiome assembly in tomato
Oyserman, B. O. (Creator), Flores, S. S. (Creator), Griffioen, T. (Creator), Pan, X. (Creator), van der Wijk, E. (Creator), Pronk, L. (Creator), Lokhorst, W. (Creator), Nurfikari, A. (Creator), Paulson, J. N. (Creator), Movassagh, M. (Creator), Stopnisek, N. (Creator), Kupczok, A. (Creator), Cordovez, V. (Creator), Carrión, V. J. (Creator), Ligterink, W. (Creator), Snoek, B. L. (Creator), Medema, M. H. (Creator) & Raaijmakers, J. M. (Creator), Netherlands Institute of Ecology (NIOO-KNAW), 8 Dec 2021
https://www.ncbi.nlm.nih.gov/bioproject/787039
Dataset
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Compendium of specialized metabolite biosynthetic diversity encoded in bacterial genomes
Gavriilidou, A. (Creator), Kautsar, S. A. (Creator), Zaburannyi, N. (Creator), Krug, D. (Creator), Müller, R. (Creator), Medema, M. H. (Creator) & Ziemert, N. (Creator), University of Tübingen, 15 Apr 2022
Dataset
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CCDC 1535309: Experimental Crystal Structure Determination
Huang, A. C. (Creator), Kautsar, S. A. (Creator), Hong, Y. J. (Creator), Medema, M. H. (Creator), Bond, A. D. (Creator), Tantillo, D. J. (Creator) & Osbourn, A. (Creator), John Innes Centre, 28 Feb 2017
DOI: 10.5517/ccdc.csd.cc1njm3x
Dataset
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CCDC 1539191: Experimental Crystal Structure Determination
Huang, A. C. (Creator), Kautsar, S. A. (Creator), Hong, Y. J. (Creator), Medema, M. H. (Creator), Bond, A. D. (Creator), Tantillo, D. J. (Creator) & Osbourn, A. (Creator), John Innes Centre, 20 Mar 2017
DOI: 10.5517/ccdc.csd.cc1nnnb9
Dataset