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Collaborations and top research areas from the last five years
Profiles
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Maarten Boneschansker, MSc
- Bioinformatics (BIF) - PhD candidate
- VLAG - PhD candidate
Person: PhD-student
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A generic pipeline for CADD Score generation: chickenCADD and turkeyCADD
Lensing, K., van Schipstal, J., de Ridder, D., Groenen, M. & Derks, M., 2026, In: G3: Genes, Genomes, Genetics. 16, 1, jkaf272.Research output: Contribution to journal › Article › Academic › peer-review
Open Access1 Link opens in a new tab Citation (Scopus) -
An approach to making life sciences FAIR—FAIR-DS as a tool for Aspergillus fumigatus
Bakker, S., Santos-Silva, M., Rhodes, J., Schoustra, S., Zwaan, B. & Fensel, A., 2 Jan 2026, In: Database. 2025, baaf082.Research output: Contribution to journal › Article › Academic › peer-review
Open Access -
BGC-Viewer
Kok, P., Sales E Santos Loureiro, C. C., Draisma, A. M., Louwen, N. L. L., Kasalica, V. & Medema, M. H., 20 Jan 2026Research output: Non-textual form › Software
Open Access
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Map Metabolic Interactions in the Rhizosphere
Selten, G. (PI), Medema, M. (Project Leader) & Dutilh, B. E. (PI)
1/01/26 → 31/01/30
Project: PostDoc
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GenomeDesigner: plant breeding by design
Rong, Y. (PhD candidate), de Ridder, D. (Promotor) & Peters, S. (Co-promotor)
1/10/25 → …
Project: PhD
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Unraveling the genetic cause of color of longan fruit
Le, E. (PhD candidate), de Ridder, D. (Promotor) & Smit, S. (Co-promotor)
1/10/25 → …
Project: PhD
Datasets
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Profile hidden Markov models trained on aligned KEGG Orthology sequences for enzyme annotation
Rodenburg, Y. A. (Creator), de Ridder, D. (Contributor), Govers, F. (Contributor) & Seidl, M. F. (Creator), Wageningen University & Research, 7 Oct 2019
DOI: 10.4121/uuid:9b6e6aa0-b815-409f-9e96-04828b03290b
Dataset
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Single-molecule protein sequencing through fingerprinting: computational assessment
Yao, Y. (Creator), Docter, M. W. (Creator), van Ginkel, H. G. T. M. (Creator), de Ridder, D. (Creator) & Joo, C. (Creator), TU Delft, 19 Jan 2018
DOI: 10.4121/uuid:08a078fc-9d4c-44d1-88c9-9cb412b83a46
Dataset
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Data from: Genome assembly of Danaus chrysippus and comparison with the Monarch Danaus plexippus
Singh, K. S. (Creator), De-Kayne, R. (Creator), Omufwoko, K. S. (Creator), Martins, D. (Creator), Bass, C. (Creator), Ffrench-Constant, R. (Creator) & Martin, S. H. (Creator), Wageningen University, 27 Nov 2021
Dataset
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AI in bioinformatics research & education
de Ridder, D. (Speaker)
1 Mar 2024Activity: Talk/presentation/lecture › Oral presentation › Academic
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WUR Dies Natalis 2024 | Presentation Hannah Augustijn
Augustijn, H. (Speaker)
8 Mar 2024Activity: Talk/presentation/lecture › Oral presentation › Professional
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Prioritization of metabolite features by FERMO
Zdouc, M. (Speaker)
20 Jun 2024Activity: Talk/presentation/lecture › Oral presentation › Academic
Press/Media
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Lisianthus grower Richard van der Lugt: ‘Lava filter helping to improve losses’ : filter removes Fusarium from drain water
Paternotte, S. J. & Medema, M.
15/05/25
1 Media contribution
Press/Media: Expert Comment › Professional
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Wat een bacterie in potentie kan, is veel meer dan wat je ziet
30/03/24
1 Media contribution
Press/Media: Research › Popular
Prizes
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Research Award 2020
Navarro Munoz, J. (Recipient), 9 Mar 2020
Prize: Prize (including medals and awards)
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Winner of the Lighthouse Award 2022
van der Hooft, J. (Recipient), 13 May 2022
Prize: Prize (including medals and awards)