Research output per year
Research output per year
Fingerprint
Dive into the research topics where Bioinformatics (BIF) is active. These topic labels come from the works of this organisation's members. Together they form a unique fingerprint.
Collaborations and top research areas from the last five years
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
Profiles
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Maarten Boneschansker, MSc
- Bioinformatics (BIF) - PhD candidate
- VLAG - PhD candidate
Person: PhD-student
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A Non-Metaproteomics Researchers’ View on Metaproteomics in Microbiome Research
Aho, V. T. E., Clerbaux, L. A., Kupczok, A., Tillett, B., Garg, N. & Henderickx, J. G. E., 27 Apr 2025, (E-pub ahead of print) In: Proteomics.Research output: Contribution to journal › Comment/Letter to the editor › Academic › peer-review
Open Access -
Automated Machine Learning to Predict the Precursors of Plant Specialized Metabolites
Capela, J., Cheixo, J., de Ridder, D., Rocha, M. & Dias, O., 24 Apr 2025, Practical Applications of Computational Biology and Bioinformatics, 18th International Conference, PACBB 2024. Cuadrado, S., Fdez-Riverola, F., Alonso, Á. C., Rocha, M., Mohamad, M. S. & Gil-González, A. B. (eds.). Cham: Springer, p. 153-162 10 p. (Lecture Notes in Networks and Systems (LNNS); vol. 1350).Research output: Chapter in Book/Report/Conference proceeding › Conference paper › Academic › peer-review
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BGC Atlas: a web resource for exploring the global chemical diversity encoded in bacterial genomes
Bagci, C., Nuhamunada, M., Goyat, H., Ladanyi, C., Sehnal, L., Blin, K., Kautsar, S. A., Tagirdzhanov, A., Gurevich, A., Mantri, S., von Mering, C., Udwary, D., Medema, M. H., Weber, T. & Ziemert, N., 6 Jan 2025, In: Nucleic acids research. 53, D1, p. D618–D624 7 p.Research output: Contribution to journal › Article › Academic › peer-review
Open Access3 Citations (Scopus)
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Mechanisms of root microbiome recruitment under drought stress in Solanaceae
van der Wielen, N. (PhD candidate), Testerink, C. (Promotor) & Karlova, R. (Co-promotor)
1/01/25 → …
Project: PhD
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Computational pangenomics
Flege, P. (PhD candidate), de Ridder, D. (Promotor) & Smit, S. (Co-promotor)
1/12/24 → …
Project: PhD
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FIBERME
Boneschansker, M. (PhD candidate), Kleerebezem, M. (Promotor), Medema, M. (Promotor), Boekhorst, J. (Co-promotor) & Probst, D. (Co-promotor)
1/09/24 → …
Project: PhD
Datasets
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Profile hidden Markov models trained on aligned KEGG Orthology sequences for enzyme annotation
Rodenburg, Y. A. (Creator), de Ridder, D. (Contributor), Govers, F. (Contributor) & Seidl, M. F. (Creator), Wageningen University & Research, 7 Oct 2019
DOI: 10.4121/uuid:9b6e6aa0-b815-409f-9e96-04828b03290b
Dataset
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Single-molecule protein sequencing through fingerprinting: computational assessment
Yao, Y. (Creator), Docter, M. W. (Creator), van Ginkel, H. G. T. M. (Creator), de Ridder, D. (Creator) & Joo, C. (Creator), TU Delft, 19 Jan 2018
DOI: 10.4121/uuid:08a078fc-9d4c-44d1-88c9-9cb412b83a46
Dataset
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Shotgun metagenomic sequencing of cycadivorous insects
Gutiérrez-García, K. (Creator), Whitaker, M. R. L. (Creator), Bustos-Díaz, E. D. (Creator), Salzman, S. (Creator), Ramos-Aboites, H. E. (Creator), Reitz, Z. L. (Creator), Pierce, N. E. (Creator), Cibrián-Jaramillo, A. (Creator) & Barona-Gómez, F. (Creator), Cinvestav UGA-Langebio, 25 Apr 2023
https://www.ncbi.nlm.nih.gov/bioproject/961367
Dataset
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Prioritization of metabolite features by FERMO
Zdouc, M. (Speaker)
20 Jun 2024Activity: Talk/presentation/lecture › Oral presentation › Academic
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WUR Dies Natalis 2024 | Presentation Hannah Augustijn
Augustijn, H. (Speaker)
8 Mar 2024Activity: Talk/presentation/lecture › Oral presentation › Professional
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Crop diversification through intercropping shapes within-field soil bacterial community variation
Teunissen, J. (Speaker), Kupczok, A. (Contributor) & Geisen, S. (Contributor)
17 Jun 2024Activity: Talk/presentation/lecture › Oral presentation › Academic
Press/Media
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Wat een bacterie in potentie kan, is veel meer dan wat je ziet
30/03/24
1 Media contribution
Press/Media: Research › Popular
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CRISPR Technology Takes Center Stage at SXSW 2024 for the First Time
8/03/24
1 Media contribution
Press/Media: Expert Comment › Popular
Prizes
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Research Award 2020
Navarro Munoz, J. (Recipient), 9 Mar 2020
Prize: Prize (including medals and awards)
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Winner of the Lighthouse Award 2022
van der Hooft, J. (Recipient), 13 May 2022
Prize: Prize (including medals and awards)