Research output per year
Research output per year
Fingerprint
Dive into the research topics where Bioinformatics is active. These topic labels come from the works of this organisation's members. Together they form a unique fingerprint.
Collaborations and top research areas from the last five years
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
Profiles
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Active in vivo translocation of the Methanosarcina mazei Gö1 Casposon
Gehlert, F. O., Nickel, L., Vakirlis, N., Hammerschmidt, K., Vargas Gebauer, HI., Kießling, C., Kupczok, A. & Schmitz, R. A., 31 May 2023, In: Nucleic acids research. 51, 13, p. 6927-6943Research output: Contribution to journal › Article › Academic › peer-review
Open Access -
An Efficient Triplex TaqMan Quantitative PCR to Detect a Blackleg-Causing Lineage of Pectobacterium brasiliense in Potato Based on a Pangenome Analysis
van der Lee, T. A. J., van Gent-Pelzer, M. P. E., Jonkheer, E. M., Brankovics, B., Houwers, I. M., van der Wolf, J. M., Bonants, P. J. M., van Duivenbode, I., Vreeburg, R. A. M., Nas, M. & Smit, S., 13 Aug 2023, In: Microorganisms. 11, 8, 2080.Research output: Contribution to journal › Article › Academic › peer-review
Open Access -
AntiSMASH 7.0: New and improved predictions for detection, regulation, chemical structures and visualisation
Blin, K., Shaw, S., Augustijn, H. E., Reitz, Z. L., Biermann, F., Alanjary, M., Fetter, A., Terlouw, B. R., Metcalf, W. W., Helfrich, E. J. N., Van Wezel, G. P., Medema, M. H. & Weber, T., 5 Jul 2023, In: Nucleic acids research. 51, W1, p. W46-W50Research output: Contribution to journal › Article › Academic › peer-review
Open Access62 Citations (Scopus)
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Integration of computational mass spectrometry and risk-based datamining in food safety analysis
Dietrich, J., de Ridder, D., Mol, H. & van der Hooft, J.
15/10/23 → …
Project: PhD
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Gene regulatory deep learning networks
Alonso Esteve, J., de Ridder, D. & van Dijk, A.
1/10/23 → …
Project: PhD
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Substructure-driven linking of Genes and Metabolites to accelerate Natural Products Discovery - novel bioactive metabolites
Torres Ortega, R., Medema, M., de Ridder, D. & van der Hooft, J.
1/10/23 → …
Project: PhD
Datasets
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Profile hidden Markov models trained on aligned KEGG Orthology sequences for enzyme annotation
Rodenburg, Y. A. (Creator), de Ridder, D. (Contributor), Govers, F. (Contributor) & Seidl, M. F. (Creator), Wageningen University & Research, 7 Oct 2019
DOI: 10.4121/uuid:9b6e6aa0-b815-409f-9e96-04828b03290b
Dataset
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Single-molecule protein sequencing through fingerprinting: computational assessment
Yao, Y. (Creator), Docter, M. W. (Creator), van Ginkel, H. G. T. M. (Creator), de Ridder, D. (Creator) & Joo, C. (Creator), TU Delft, 19 Jan 2018
DOI: 10.4121/uuid:08a078fc-9d4c-44d1-88c9-9cb412b83a46
Dataset
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Metagenomic Screening of ancient DNA from a Late Medieval mass burial site in Lübeck, Northern Germany, revealed occurence of S. Paratyphi C.
Haller, M. (Creator), Callan, K. (Creator), Susat, J. (Creator), Flux, A. L. (Creator), Immel, A. (Creator), Franke, A. (Creator), Herbig, A. (Creator), Krause, J. (Creator), Kupczok, A. (Creator), Fouquet, G. (Creator), Hummel, S. (Creator), Rieger, D. (Creator), Nebel, A. (Creator) & Krause-Kyora, B. (Creator), Kiel University, 1 Mar 2021
https://www.ebi.ac.uk/ena/browser/view/PRJEB41353
Dataset
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6th Conference New Technologies in Agriculture.
Willem Jan Knibbe (Invited speaker), Dick de Ridder (Contributor) & Jene van der Heide (Contributor)
9 Dec 2021Activity: Talk or presentation › Oral presentation › Academic
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Digital Twins in the Living Environment
Dick de Ridder (Contributor), Jene van der Heide (Contributor) & Willem Jan Knibbe (Speaker)
1 Nov 2021Activity: Talk or presentation › Public lecture/debate/seminar › Academic
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From GWAS Peak to Causal Mutation; Utilizing p(ig)CADD Scores to Prioritize Sequence Variation
Martijn Derks (Speaker), Christian Gross (Contributor), M.S. Lopes (Contributor), M.J.T. Reinders (Contributor), Mirte Bosse (Contributor), Arne B. Gjuvsland (Contributor), Hendrik-Jan Megens (Contributor), Dick de Ridder (Contributor) & Martien Groenen (Contributor)
11 Jan 2020 → 15 Jan 2020Activity: Talk or presentation › Public lecture/debate/seminar › Other
Press/Media
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The open science story of Justin van der Hooft
22/03/23
1 Media contribution
Press/Media: Expert Comment › Academic
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Dutch cabinet invests EUR42 million in CROP-XR institute for faster development of resilient agricultural crops
Richard Immink, Christa Testerink, Dick de Ridder & Aalt-Jan van Dijk
18/04/22
1 Media contribution
Press/Media: Research › Popular
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Searching for micro weapons factories
Barbara Terlouw
24/03/22 → 25/03/22
2 Media contributions
Press/Media: Research › Professional
Prizes
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Winner of the Lighthouse Award 2022
van der Hooft, Justin (Recipient), 13 May 2022
Prize: Prize (including medals and awards)