Bioinformatics

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Genome Medicine & Life Sciences

Multigene Family Medicine & Life Sciences

Genes Chemical Compounds

genome Agriculture & Biology

Biological Products Medicine & Life Sciences

genes Agriculture & Biology

Arabidopsis Medicine & Life Sciences

Lycopersicon esculentum Medicine & Life Sciences

Network Recent external collaboration on country level. Dive into details by clicking on the dots.

Profiles

Mehmet Akdel, MSc

Bioinformatics - PhD Student

Person: PhD-student

Miguel Correa Marrero, MSc

Bioinformatics - External employee

Person: Other

Research Output 2000 2020

Mass spectrometry searches using MASST

Wang, M., Jarmusch, A. K., Vargas, F., Aksenov, A. A., Gauglitz, J. M., Weldon, K., Petras, D., da Silva, R., Quinn, R., Melnik, A. V., van der Hooft, J. J. J., Caraballo-Rodríguez, A. M., Nothias, L. F., Aceves, C. M., Panitchpakdi, M., Brown, E., Di Ottavio, F., Sikora, N., Elijah, E. O., Labarta-Bajo, L. & 16 others, Gentry, E. C., Shalapour, S., Kyle, K. E., Puckett, S. P., Watrous, J. D., Carpenter, C. S., Bouslimani, A., Ernst, M., Swafford, A. D., Zúñiga, E. I., Balunas, M. J., Klassen, J. L., Loomba, R., Knight, R., Bandeira, N. & Dorrestein, P. C., 1 Jan 2020, In : Nature Biotechnology. 38, p. 23-26 4 p.

Research output: Contribution to journal › Letter › Academic › peer-review

MIBiG 2.0: a repository for biosynthetic gene clusters of known function

Kautsar, S. A., Blin, K., Shaw, S., Navarro Munoz, J. C., Terlouw, B., van der Hooft, J. J. J., Van Santen, J. A., Tracanna, V., Suarez Duran, H., Pascal Andreu, V., Selem Mojica, N., Alanjary, M., Robinson, S., Lund, G., Epstein, S. C., Sisto, A. C., Charkoudian, L. K., Collemare, J., Linington, R. G., Weber, T. & 1 others, Medema, M. H., 8 Jan 2020, In : Nucleic acids research. 48, D1, p. D454-D458

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

Multigene Family

Microbial Genome

Chemical Databases

Data Mining

Explosions

Untargeted mass spectrometry-based metabolomics approach unveils molecular changes in raw and processed foods and beverages

Gauglitz, J. M., Aceves, C. M., Aksenov, A. A., Aleti, G., Almaliti, J., Bouslimani, A., Brown, E. A., Campeau, A., Caraballo-Rodríguez, A. M., Chaar, R., da Silva, R. R., Demko, A. M., Di Ottavio, F., Elijah, E., Ernst, M., Ferguson, L. P., Holmes, X., Jarmusch, A. K., Jiang, L., Kang, K. B. & 27 others, Koester, I., Kwan, B., Li, J., Li, Y., Melnik, A. V., Molina-Santiago, C., Ni, B., Oom, A. L., Panitchpakdi, M. W., Petras, D., Quinn, R., Sikora, N., Spengler, K., Teke, B., Tripathi, A., Ul-Hasan, S., van der Hooft, J. J. J., Vargas, F., Vrbanac, A., Vu, A. Q., Wang, S. C., Weldon, K., Wilson, K., Wozniak, J. M., Yoon, M., Bandeira, N. & Dorrestein, P. C., 1 Jan 2020, In : Food Chemistry. 302, 125290.

Research output: Contribution to journal › Article › Academic › peer-review

Processed foods

Food and Beverages

raw foods

Metabolomics

Beverages

Projects 2005 2021

12 Finished
18 Active

Integrative bioinformatics for linking genomics to phenomics (a Netherlands-Pakistan collaboration)

Farooq, M., Nijveen, H., de Ridder, D. & van Dijk, A.

26/11/18 → …

Project: PhD

Pangenomic applications for plants and pathogens

Jonkheer, E., Smit, S., de Ridder, D. & van der Lee, T.

15/09/18 → …

Project: PhD

Meiotic Recombination in Crops

Fuentes, R., Peters, S., de Ridder, D. & van Dijk, A.

15/05/18 → …

Project: PhD

Datasets

Profile hidden Markov models trained on aligned KEGG Orthology sequences for enzyme annotation

Rodenburg, S. (Creator), Seidl, M. (Creator), Wageningen University & Research, 7 Oct 2019

DOI: 10.4121/uuid:9b6e6aa0-b815-409f-9e96-04828b03290b

Dataset

Single-molecule protein sequencing through fingerprinting: computational assessment

Yao, Y. (Creator), Docter, M. W. (Creator), van Ginkel, H. G. T. M. (Creator), de Ridder, D. (Creator), Joo, C. (Creator), Delft University of Technology, 19 Jan 2018

DOI: 10.4121/uuid:08a078fc-9d4c-44d1-88c9-9cb412b83a46

Dataset

Beauveria bassiana Genome sequencing and assembly

Valero Jimenez, C. A. (Creator), Faino, L. (Creator), Spring in 'T Veld, D. (Creator), Smit, S. (Creator), Zwaan, B. (Creator), van Kan, J. (Creator), Wageningen University, 8 Jul 2016

https://www.ncbi.nlm.nih.gov/bioproject/PRJNA260878/

Dataset

Activities 2017 2018

3 Oral presentation
1 Other

Predicting variant deleteriousness in non-human species: taking CADD approach to pig

Christian Gross (Speaker)

12 Dec 2018

Activity: Talk or presentation › Oral presentation

A community-driven paired data platform to accelerate natural product mining

J.J.J. van der Hooft (Speaker)

12 Dec 2018

Activity: Talk or presentation › Oral presentation

Identification of Deleterious Alleles in Poultry

M.F.L. Derks (Contributor), M. Bosse (Speaker), H.J.W.C. Megens (Contributor), D. de Ridder (Contributor), Marcel J.T. Reinders (Contributor), Christian Gross (Contributor), M. Groenen (Contributor)

15 Jan 2017

Activity: Talk or presentation › Oral presentation

Press / Media

Software speeds up search for new antibiotics

Marnix Medema

5/12/19

2 Media contributions

Press/Media: Research

Steeds meer kennis over DNA beschikbaar

Roeland van Ham

1/01/09

1 item of Media coverage

Press/Media: Expert Comment