Bioinformatics

Fingerprint Dive into the research topics where Bioinformatics is active. These topic labels come from the works of this organisation's members. Together they form a unique fingerprint.

Network Recent external collaboration on country level. Dive into details by clicking on the dots.

Profiles

Mehmet Akdel, MSc

Bioinformatics - PhD Student

Person: PhD-student

Carlos de Lannoy, MSc

Bioinformatics - External employee

Person: Other

Research Output

Assessing specialized metabolite diversity of Alnus species by a digitized LC–MS/MS data analysis workflow

Kang, K. B., Woo, S., Ernst, M., van der Hooft, J. J. J., Nothias, L. F., da Silva, R. R., Dorrestein, P. C., Sung, S. H. & Lee, M., 1 May 2020, In : Phytochemistry. 173, 112292.

Research output: Contribution to journal › Article › Academic › peer-review

Caretta – A multiple protein structure alignment and feature extraction suite

Akdel, M., Durairaj, J., de Ridder, D. & van Dijk, A. D. J., 2020, In : Computational and Structural Biotechnology Journal. 18, p. 981-992 12 p.

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

Designing Eukaryotic Gene Expression Regulation Using Machine Learning

de Jongh, R. P. H., van Dijk, A. D. J., Julsing, M. K., Schaap, P. J. & de Ridder, D., Feb 2020, In : Trends in Biotechnology. 38, 2, p. 191-201

Research output: Contribution to journal › Article › Academic › peer-review

1 Citation (Scopus)

Projects

12 Finished
19 Active

Integrative bioinformatics for linking genomics to phenomics (a Netherlands-Pakistan collaboration)

Farooq, M., Nijveen, H., de Ridder, D. & van Dijk, A.

26/11/18 → …

Project: PhD

Pangenomic applications for plants and pathogens

Jonkheer, E., Smit, S., de Ridder, D. & van der Lee, T.

15/09/18 → …

Project: PhD

In pursuit of next-generation lipopeptide antibiotics

Terlouw, B., Medema, M. & de Ridder, D.

1/07/18 → …

Project: PhD

Datasets

Profile hidden Markov models trained on aligned KEGG Orthology sequences for enzyme annotation

Rodenburg, Y. A. (Creator), Seidl, M. (Creator), Wageningen University & Research, 7 Oct 2019

DOI: 10.4121/uuid:9b6e6aa0-b815-409f-9e96-04828b03290b

Dataset

Single-molecule protein sequencing through fingerprinting: computational assessment

Yao, Y. (Creator), Docter, M. W. (Creator), van Ginkel, H. G. T. M. (Creator), de Ridder, D. (Creator), Joo, C. (Creator), Delft University of Technology, 19 Jan 2018

DOI: 10.4121/uuid:08a078fc-9d4c-44d1-88c9-9cb412b83a46

Dataset

Olfactomedin 4 serves as a marker for disease severity in pediatric Respiratory Syncytial Virus (RSV) infection

Brand, K. H. (Creator), Ahout, I. M. (Creator), de Ridder, D. (Creator), van Diepen, A. (Creator), Li, Y. (Creator), Zaalberg, M. (Creator), Andeweg, A. (Creator), Roeleveld, N. (Creator), de Groot, R. (Creator), Warris, A. (Creator), Hermans, P. W. (Creator), Ferwerda, G. (Creator), Staal, F. J. (Creator), Wageningen University, 6 Jun 2015

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE69606

Dataset

Activities

3 Oral presentation
1 Other
1 Public lecture/debate/seminar

From GWAS Peak to Causal Mutation; Utilizing p(ig)CADD Scores to Prioritize Sequence Variation

Martijn Derks (Speaker), Christian Gross (Contributor), M.S. Lopes (Contributor), M.J.T. Reinders (Contributor), Mirte Bosse (Contributor), Arne B. Gjuvsland (Contributor), Hendrik-Jan Megens (Contributor), Dick de Ridder (Contributor), Martien Groenen (Contributor)

11 Jan 2020 → 15 Jan 2020

Activity: Talk or presentation › Public lecture/debate/seminar