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2020

A lysin motif effector subverts chitin-triggered immunity to facilitate arbuscular mycorrhizal symbiosis

Zeng, T., Rodriguez-Moreno, L., Mansurkhodzaev, A., Wang, P., van den Berg, W., Gasciolli, V., Cottaz, S., Fort, S., Thomma, B. P. H. J., Bono, J. J., Bisseling, T. & Limpens, E., Jan 2020, In : New Phytologist. 225, 1, p. 448-460

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
4 Citations (Scopus)

Anthoceros genomes illuminate the origin of land plants and the unique biology of hornworts

Li, F. W., Nishiyama, T., Waller, M., Frangedakis, E., Keller, J., Li, Z., Fernandez-Pozo, N., Barker, M. S., Bennett, T., Blázquez, M. A., Cheng, S., Cuming, A. C., de Vries, J., de Vries, S., Delaux, P. M., Diop, I. S., Harrison, J. C., Hauser, D., Hernández-García, J., Kirbis, A. & 14 others, Meeks, J. C., Monte, I., Mutte, S. K., Neubauer, A., Quandt, D., Robison, T., Shimamura, M., Rensing, S. A., Villarreal, J. C., Weijers, D., Wicke, S., Wong, G. K. S., Sakakibara, K. & Szövényi, P., 13 Mar 2020, In : Nature Plants. 6, 3, p. 259-272 14 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)

A PXY-Mediated Transcriptional Network Integrates Signaling Mechanisms to Control Vascular Development in Arabidopsis

Smit, M., Mcgregor, S., Sun, H., Gough, C., Bågman, A-M., Soyars, C. L., Kroon, J. T. M., Gaudinier, A., Williams, C. J., Yang, X., Nimchuk, Z. L., Weijers, D., Turner, S. R., Brady, S. M. & Etchells, P., Feb 2020, In : The Plant Cell. 32, 2

Research output: Contribution to journalArticleAcademicpeer-review

2 Citations (Scopus)

Assorted Pastries at the South Pole

Weijers, D., 27 Jan 2020, In : Developmental Cell. 52, 2, p. 137-138 2 p.

Research output: Contribution to journalArticleAcademicpeer-review

Dataset on proteomic changes of whey protein after different heat treatment

Xiong, L., Boeren, S., Vervoort, J. & Hettinga, K., 1 Apr 2020, In : Data in Brief. 29, 105227.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Deep Evolutionary History of the Phox and Bem1 (PB1) Domain Across Eukaryotes

Mutte, S. K. & Weijers, D., 2 Mar 2020, In : Scientific Reports. 10, 3797.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

DIX Domain Polymerization Drives Assembly of Plant Cell Polarity Complexes

van Dop, M., Fiedler, M., Mutte, S., de Keijzer, J., Olijslager, L., Albrecht, C., Liao, C. Y., Janson, M. E., Bienz, M. & Weijers, D., 6 Feb 2020, In : Cell. 180, 3, p. 427-439.e12

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
3 Citations (Scopus)

Effect of heat treatment on bacteriostatic activity and protein profile of bovine whey proteins

Xiong, L., Li, C., Boeren, S., Vervoort, J. & Hettinga, K., 1 Jan 2020, In : Food Research International. 127, 108688.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
3 Citations (Scopus)

Evolution of vascular plants through redeployment of ancient developmental regulators

Lu, K. J., van’t Wout Hofland, N., Mor, E., Mutte, S., Abrahams, P., Kato, H., Vandepoele, K., Weijers, D. & de Rybel, B., 7 Jan 2020, In : Proceedings of the National Academy of Sciences of the United States of America. 117, 1, p. 733-740 8 p.

Research output: Contribution to journalArticleAcademicpeer-review

Flavoenzyme-mediated regioselective aromatic hydroxylation with coenzyme biomimetics

Guarneri, A., Westphal, A., Leertouwer, J., Lunsonga, J., Franssen, M. C. R., Opperman, D. J., Hollmann, F., van Berkel, W. J. H. & Paul, C. E., 6 Mar 2020, In : ChemCatChem. 12, 5, p. 1368-1375

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

GH3 Auxin-Amido Synthetases Alter the Ratio of Indole-3-Acetic Acid and Phenylacetic Acid in Arabidopsis

Aoi, Y., Tanaka, K., Cook, S. D., Hayashi, K. I. & Kasahara, H., Mar 2020, In : Plant & cell physiology. 61, 3, p. 596-605 10 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

HILPDA Uncouples Lipid Droplet Accumulation in Adipose Tissue Macrophages from Inflammation and Metabolic Dysregulation

van Dierendonck, X. A. M. H., de la Rosa Rodriguez, M. A., Georgiadi, A., Mattijssen, F., Dijk, W., van Weeghel, M., Singh, R., Borst, J. W., Stienstra, R. & Kersten, S., 11 Feb 2020, In : Cell Reports. 30, 6, p. 1811-1822.e6

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Relationship between energy balance and metabolic profiles in plasma and milk of dairy cows in early lactation

Xu, W., Vervoort, J., Saccenti, E., Kemp, B., van Hoeij, R. J. & van Knegsel, A. T. M., 26 Feb 2020, In : Journal of Dairy Science. 103, p. 4795–4805

Research output: Contribution to journalArticleAcademicpeer-review

Rice microtubule-associated protein IQ67-DOMAIN14 regulates grain shape by modulating microtubule cytoskeleton dynamics

Yang, B. J., Wendrich, J. R., De Rybel, B., Weijers, D. & Xue, H. W., May 2020, In : Plant Biotechnology Journal. 18, 5, p. 1141-1152

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)

RIdeogram: Drawing SVG graphics to visualize and map genome-wide data on the idiograms

Hao, Z., Lv, D., Ge, Y., Shi, J., Weijers, D., Yu, G. & Chen, J., 20 Jan 2020, In : PeerJ Computer Science. 6, p. 1-11 11 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
3 Citations (Scopus)

Specification and regulation of vascular tissue identity in the Arabidopsis embryo

Smit, M. E., Llavata-Peris, C. I., Roosjen, M., van Beijnum, H., Novikova, D., Levitsky, V., Sevilem, I., Roszak, P., Slane, D., Jürgens, G., Mironova, V., Brady, S. M. & Weijers, D., Apr 2020, In : Development (Cambridge). 147, 8, dev186130.

Research output: Contribution to journalArticleAcademicpeer-review

Time-gated confocal microscopy reveals accumulation of exocyst subunits at the plant-pathogen interface

Overdijk, E. J. R., Tang, H., Borst, J. W., Govers, F. & Ketelaar, T., 23 Jan 2020, In : Journal of Experimental Botany. 71, 3, p. 837-849 13 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2019

Adapting INTACT to analyse cell-type-specific transcriptomes and nucleocytoplasmic mRNA dynamics in the Arabidopsis embryo

Palovaara, J. & Weijers, D., Mar 2019, In : Plant Reproduction. 32, 1, p. 113-121 9 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
4 Citations (Scopus)

Analysis and modeling of enhanced green fluorescent protein diffusivity in whey protein gels

Luo, Q., Sewalt, E., Borst, J. W., Westphal, A. H., Boom, R. M. & Janssen, A. E. M., Jun 2019, In : Food Research International. 120, p. 449-455 10.087.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)

Antitumor astins originate from the endophyte Cyanodermella asteris living within the medicinal plant Aster tataricus

Schafhauser, T., Jahn, L., Kirchner, N., Kulik, A., Flor, L., Lang, A., Caradec, T., Fewer, D. P., Sivonen, K., van Berkel, W. J. H., Jacques, P., Weber, T., Gross, H., van Pée, K. H., Wohlleben, W. & Ludwig-Müller, L., Dec 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 52, p. 26909-26917

Research output: Contribution to journalArticleAcademicpeer-review

1 Citation (Scopus)

A Robust Auxin Response Network Controls Embryo and Suspensor Development through a bHLH Transcriptional Module

Radoeva, T., Lokerse, A. S., Llavata-Peris, C. I., Wendrich, J., Xiang, D., Liao, C-Y., Vlaar, L., Boekschoten, M., Hooiveld, G., Datla, R. & Weijers, D., Jan 2019, In : The Plant Cell. 31, p. 52-67

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
7 Citations (Scopus)

Astin C Production by the Endophytic Fungus Cyanodermella asteris in Planktonic and Immobilized Culture Conditions

Vassaux, A., Tarayre, C., Arguëlles-Arias, A., Compère, P., Delvigne, F., Fickers, P., Jahn, L., Lang, A., Leclère, V., Ludwig-Müller, J., Ongena, M., Schafhauser, T., Telek, S., Théatre, A., van Berkel, W. J. H., Vandenbol, M., van Pée, K. H., Willems, L., Wohlleben, W. & Jacques, P., 1 Aug 2019, In : Biotechnology Journal. 14, 8, 1800624.

Research output: Contribution to journalArticleAcademicpeer-review

1 Citation (Scopus)

Asymmetric redundancy of ZERZAUST and ZERZAUST HOMOLOG in different accessions of arabidopsis thaliana

Vaddepalli, P., Fulton, L. & Schneitz, K., 1 Jul 2019, In : G3: Genes, Genomes, Genetics. 9, 7, p. 2245-2252 8 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)
Open Access

Development of omics-based protocols for the microbiological characterization of multi-strain formulations marketed as probiotics: the case of VSL#3

Mora, D., Filardi, R., Arioli, S., Boeren, S., Aalvink, S. & de Vos, W. M., Nov 2019, In : Microbial Biotechnology. 12, 6, p. 1371-1386

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2 Citations (Scopus)

Dimerization of Proline Dehydrogenase from Thermus thermophilus Is Crucial for Its Thermostability

Huijbers, M. M. E., Wu, J. W., Westphal, A. H. & van Berkel, W. J. H., 1 May 2019, In : Biotechnology Journal. 14, 5, 1800540.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)

DNA-guided DNA cleavage at moderate temperatures by Clostridium butyricum Argonaute

Hegge, J. W., Swarts, D. C., Chandradoss, S. D., Cui, T. J., Kneppers, J., Jinek, M., Joo, C. & van der Oost, J., 20 Jun 2019, In : Nucleic acids research. 47, 11, p. 5809-5821 13 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
6 Citations (Scopus)

DOF2.1 Controls Cytokinin-Dependent Vascular Cell Proliferation Downstream of TMO5/LHW

Smet, W., Sevilem, I., de Luis Balaguer, M. A., Wybouw, B., Mor, E., Miyashima, S., Blob, B., Roszak, P., Jacobs, T. B., Boekschoten, M., Hooiveld, G., Sozzani, R., Helariutta, Y. & De Rybel, B., 4 Feb 2019, In : Current Biology. 29, 3, p. 520-529.e6

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
10 Citations (Scopus)

Editorial: Actinobacteria, a source of biocatalytic tools

Tischler, D., Van Berkel, W. J. H. & Fraaije, M. W., 16 Apr 2019, In : Frontiers in Microbiology. 10, 809.

Research output: Contribution to journalArticleAcademic

Open Access
1 Citation (Scopus)

Effects of Maerua subcordata (Gilg) DeWolf on electrophile-responsive element (EpRE)mediated gene expression in vitro

Hiben, M. G., De Haan, L., Spenkelink, B., Wesseling, S., Louisse, J., Vervoort, J. & Rietjens, I. M. C. M., 1 Apr 2019, In : PLoS ONE. 14, 4, e0215155.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)

Evolution, Initiation, and Diversity in Early Plant Embryogenesis

Radoeva, T., Vaddepalli, P., Zhang, Z. & Weijers, D., 9 Sep 2019, In : Developmental Cell. 50, 5, p. 533-543 11 p.

Research output: Contribution to journalArticleAcademicpeer-review

Hazard assessment of Maerua subcordata (Gilg) DeWolf. for selected endpoints using a battery of in vitro tests

Gebrelibanos Hiben, M., Kamelia, L., de Haan, L., Spenkelink, B., Wesseling, S., Vervoort, J. & Rietjens, I. M. C. M., 15 Sep 2019, In : Journal of Ethnopharmacology. 241, 111978.

Research output: Contribution to journalArticleAcademicpeer-review

1 Citation (Scopus)

Human Milk Short-Chain Fatty Acid Composition is Associated with Adiposity Outcomes in Infants

Prentice, P. M., Schoemaker, M. H., Vervoort, J., Hettinga, K., Lambers, T. T., van Tol, E. A. F., Acerini, C. L., Olga, L., Petry, C. J., Hughes, I. A., Koulman, A., Ong, K. K. & Dunger, D. B., May 2019, In : The Journal of Nutrition. 149, 5, p. 716-722

Research output: Contribution to journalArticleAcademicpeer-review

4 Citations (Scopus)

Induction of EpRE-mediated gene expression by a series of mediterranean botanicals and their constituents

Papadi, G., Wesseling, S., Troganis, A. N., Vervoort, J. & Rietjens, I. M. C. M., 10 Aug 2019, In : Journal of Ethnopharmacology. 240, 13 p., 111940.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Introducing gene deletions by mouse zygote electroporation of Cas12a/Cpf1

Dumeau, C. E., Monfort, A., Kissling, L., Swarts, D. C., Jinek, M. & Wutz, A., Dec 2019, In : Transgenic Research. 28, 5-6, p. 525-535

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Making the cut(s): how Cas12a cleaves target and non-target DNA

Swarts, D. C., 31 Oct 2019, In : Biochemical Society Transactions. 47, 5, p. 1499-1510 12 p.

Research output: Contribution to journalArticleAcademicpeer-review

1 Citation (Scopus)

Prediction of metabolic status of dairy cows in early lactation with on-farm cow data and machine learning algorithms

Xu, W., van Knegsel, A. T. M., Vervoort, J. J. M., Bruckmaier, R. M., van Hoeij, R. J., Kemp, B. & Saccenti, E., Nov 2019, In : Journal of Dairy Science. 102, 11, p. 10186-10201

Research output: Contribution to journalArticleAcademicpeer-review

1 Citation (Scopus)

Risk assessment of herbal supplements containing ingredients that are genotoxic and carcinogenic

Prinsloo, G., Steffens, F., Vervoort, J. & Rietjens, I. M. C. M., Dec 2019, In : Critical Reviews in Toxicology. 49, 7, p. 567-579

Research output: Contribution to journalArticleAcademicpeer-review

Short communication: Changes under low ambient temperatures in the milk lipodome and metabolome of mid-lactation cows after dehorning as a calf

Baars, T., Jahreis, G., Lorkowski, S., Rohrer, C., Vervoort, J. & Hettinga, K., Mar 2019, In : Journal of Dairy Science. 102, 3, p. 2698-2702

Research output: Contribution to journalArticleAcademicpeer-review

Stirring Up the Type V Alphabet Soup.

Swarts, D. C., 21 Feb 2019, In : The CRISPR Journal. 2, 1, p. 14-16

Research output: Contribution to journalArticleAcademicpeer-review

Subgenomic flavivirus RNA binds the mosquito DEAD/H-box helicase ME31B and determines Zika virus transmission by Aedes aegypti

Göertz, G. P., van Bree, J. W. M., Hiralal, A., Fernhout, B. M., Steffens, C., Boeren, S., Visser, T. M., Vogels, C. B. F., Abbo, S. R., Fros, J. J., Koenraadt, C. J. M., van Oers, M. M. & Pijlman, G. P., 17 Sep 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 38, p. 19136-19144 9 p.

Research output: Contribution to journalArticleAcademicpeer-review

3 Citations (Scopus)

The Transcriptional Landscape of Polyploid Wheats and Their Diploid Ancestors during Embryogenesis and Grain Development

Xiang, D., Quilichini, T. D., Liu, Z., Gao, P., Pan, Y., Li, Q., Nilsen, K. T., Venglat, P., Esteban, E., Pasha, A., Wang, Y., Wen, R., Zhang, Z., Hao, Z., Wang, E., Wei, Y., Cuthbert, R., Kochian, L. V., Sharpe, A., Provart, N. & 4 others, Weijers, D., Gillmor, S. C., Pozniak, C. & Datla, R., 1 Dec 2019, In : The Plant Cell. 31, 12, p. 2888-2911 24 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2 Citations (Scopus)

Variability of Serum Proteins in Chinese and Dutch Human Milk during Lactation

Elwakiel, M., Boeren, S., Hageman, J. A., Szeto, I. M., Schols, H. A. & Hettinga, K. A., 27 Feb 2019, In : Nutrients. 11, 3

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
4 Citations (Scopus)
2018

A Plausible Microtubule-Based Mechanism for Cell Division Orientation in Plant Embryogenesis

Chakrabortty, B., Willemsen, V., de Zeeuw, T., Liao, C. Y., Weijers, D., Mulder, B. & Scheres, B., 8 Oct 2018, In : Current Biology. 28, 19, p. 3031-3043.e2

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
16 Citations (Scopus)

A toolkit for studying cellular reorganization during early embryogenesis in Arabidopsis thaliana

Liao, C. Y. & Weijers, D., 1 Mar 2018, In : Plant Journal. 93, 6, p. 963-976

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
9 Citations (Scopus)

Auxin Response Factors: Output control in auxin biology

Roosjen, M., Paque, S. & Weijers, D., 1 Jan 2018, In : Journal of Experimental Botany. 69, 2, p. 179-188

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
32 Citations (Scopus)

A xylenol orange-based screening assay for the substrate specificity of flavin-dependent para-phenol oxidases

Ewing, T. A., Van Noord, A., Paul, C. E. & Van Berkel, W. J. H., 2018, In : Molecules. 23, 1, 164.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
4 Citations (Scopus)

Catalytic performance of a class III Old yellow enzyme and its cysteine variants

Scholtissek, A., Gädke, E., Paul, C. E., Westphal, A. H., van Berkel, W. J. H. & Tischler, D., 12 Oct 2018, In : Frontiers in Microbiology. 9, OCT, 02410.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
4 Citations (Scopus)

Changes in Plasma Protein Expression Indicative of Early Diet-induced Metabolic Disease in Male Pigs (Sus scrofa).

te Pas, M. F. W., Koopmans, S. J., Kruijt, L., Boeren, J. A. & Smits, M. A., 15 May 2018, In : Comparative Medicine. 68, 4, p. 286-293

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Comparative proteome analysis of propionate degradation by Syntrophobacter fumaroxidans in pure culture and in coculture with methanogens

Sedano-Núñez, V. T., Boeren, S., Stams, A. J. M. & Plugge, C. M., 1 May 2018, In : Environmental Microbiology. 20, 5, p. 1842-1856

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
9 Citations (Scopus)