Research Output 1969 2019

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2018

Cell-type-specific promoter identification using enhancer trap lines

Radoeva, T., Saiga, S. & Weijers, D., 25 Jul 2018, Plant Transcription Factors: Methods and Protocols. Humana Press Inc., p. 127-139 (Methods in Molecular Biology; vol. 1830).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

Arabidopsis
Developmental Biology
Genes
Transcription Factors
T-DNA

Methods Used to Reversibly Resolve Flavoproteins into the Constituents Apoflavoprotein and Prosthetic Group

Müller, F. & van Berkel, W. J. H., 4 May 2018, Chemistry and Biochemistry of Flavoenzymes. Muller, F. (ed.). CRC Press, Vol. 1. p. 261-274

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

Open Access
Flavoproteins
Prosthetics
Ammonium Sulfate
Chromatography
Amino Acids
2017
6 Citations (Scopus)

FRET-FLIM for visualizing and quantifying protein interactions in live plant cells

Rios, A. F., Radoeva, T., de Rybel, B., Weijers, D. & Borst, J., 2017, Methods in Molecular Biology. Kleine-Vehn, J. & Sauer, M. (eds.). Humana Press Inc., Vol. 1497. p. 135-146 (Methods in Molecular Biology; vol. 1497).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

Optical Imaging
Energy Transfer
Plant Cells
Microscopy
Proteins
2 Citations (Scopus)

Identification of brassinosteroid signaling complexes by coimmunoprecipitation and mass spectrometry

van Dongen, W., van Heerde, L., Boeren, S. & de Vries, S. C., 2017, Brassino-steroids. Russinova, E. & Caño-Delgado, A. I. (eds.). Humana Press Inc., p. 145-154 10 p. (Methods in Molecular Biology; vol. 1564).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

Brassinosteroids
Mass Spectrometry
Phosphotransferases
Plant Proteins
Proteins
12 Citations (Scopus)

In vivo identification of plant protein complexes using IP-MS/MS

Wendrich, J. R., Boeren, S., Möller, B., Weijers, D. & de Rybel, B., 2017, Methods in Molecular Biology. Kleine-Vehn, J. & Sauer, M. (eds.). Humana Press Inc., Vol. 1497. p. 147-158 (Methods in Molecular Biology; vol. 1497).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

Plant Proteins
Proteins
Workflow
Nuclear Envelope
Tandem Mass Spectrometry
2016
7 Citations (Scopus)

A Comparison of In Vitro and In Vivo Asexual Embryogenesis

Hand, M., de Vries, S. C. & Koltunow, A., 2016, In Vitro Embryogenesis in Higher Plants. Germanà, M. A. & Lambardi, M. (eds.). Humana Press, Vol. 1359. p. 3-23 (Methods in Molecular Biology; vol. 1359).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

embryogenesis
embryo (plant)
fertilization (reproduction)
haploidy
cells
2015

Automated Annotation of Microbial and Human Flavonoid-Derived Metabolites

Mihaleva, V. V., Ünlü, F., Vervoort, J. J. M. & Ridder, L. O., 2015, Metabonomics and Gut Microbiota in Nutrition and Disease. Kochhar, S. & Martin, F. P. (eds.). London, p. 109-124 (Molecular and Integrative Toxicology).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

metabolite
software
feces
urine
nuclear magnetic resonance
8 Citations (Scopus)

Ligation-Independent Cloning for Plant Research

Wendrich, J. R., Liao, C. Y., van den Berg, W. A. M., De Rybel, B. & Weijers, D., 2015, Plant Functional Genomics : Methods and Protocols.. Alonso, J. M. & Stepanova, A. N. (eds.). [S.l.], p. 421-431 (Methods in Molecular Biology; no. 1284).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

cloning (plants)
molecular cloning
proteins
ligases
plasmids
2014

Bayer-Villiger Oxidation

de Gonzalo, G., van Berkel, W. J. H. & Fraaije, M. W., 2014, Science of Synthesis. Biocatalysis in Organic Synthesis 3. Faber, K., Fessner, W. D. & Turner, N. J. (eds.). Thieme, p. 187-233 712 p.

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

Oxidations Using Alcohol Oxidases

Ewing, T. A., Fraaije, M. W. & van Berkel, W. J. H., 2014, Science of Synthesis. Biocatalysis in Organic Synthesis 3. Faber, K., Fessner, W. & Turner, NJ. (eds.). Thieme, p. 157-185

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

2013
4 Citations (Scopus)

The flavin monooxygenases

Montersino, S. & van Berkel, W. J. H., 2013, Handbook of Flavoproteins Vol. II: Complex Flavoproteins, Dehydrogenases and Physical Methods. Hille, R., Miller, S. M. & Palfey, B. (eds.). Berlin: De Gruyter, p. 51-72 500 p.

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

Mixed Function Oxygenases
Flavin-Adenine Dinucleotide
Flavin Mononucleotide
Oxidation
Hydroxylation

The Large Scale Identification and Quantification of Conjugates of Intact and Gut Microbial Bioconversion Products of Polyphenols.

van der Hooft, J. J. J., de Vos, C. H., Bino, R. J., Mihaleva, V. V., Ridder, L. O., de Roo, N., Jacobs, D. M., van Duynhoven, J. P. M. & Vervoort, J., 2013, Magnetic Resonance in Food Science. Duynhoven, J., Belton, P. S., Webb, G. A. & As, H. (eds.). CBSG/NMC, p. 177-182

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

Bioconversion
Polyphenols
Flavonoids
Metabolites
Cocoa
2012
11 Citations (Scopus)

Chemical Identification Strategies Using Liquid Chromatography-Photodiode Array-Solid-Phase Extraction-Nuclear Magnetic Resonance/Mass Spectroscopy.

Moco, S. I. A. & Vervoort, J. J. M., 2012, Plant Metabolomics: Methods and Protocols. Hardy, N. W. & Hall, R. D. (eds.). p. 287-316 (Methods in biology; no. 860).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

Liquid chromatography
Metabolites
Photodiodes
Nuclear magnetic resonance
Spectroscopy

Proteomics biomarkers for pork quality

te Pas, M. F. W., Pierzchala, M., Keuning, E., Crump, R. E., Boeren, J. A., Hortos, M., Gisbert, M., Diestre, A. & Kruijt, L., 2012, Farm animal proteomics. Rodrigues, P., Eckersall, D. & de |Almeida, A. (eds.). Wageningen: Wageningen Academic Publishers, p. 194-198 208 p.

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

2011
6 Citations (Scopus)

Fluorescence correlation spectroscopy and fluorescence recovery after photobleaching to study receptor kinase mobility in planta.

Kwaaitaal, M. A. C. J., Schor, M., Hink, M. A., Visser, A. J. W. G. & de Vries, S. C., 2011, Plant Kinases: Methods and Protocols, Methods in Molecular Biology.. Dissmeyer, N. & Schnittger, A. (eds.). Springer, 295 p.

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

3 Citations (Scopus)

Fluorescence fluctuation analysis of receptor kinase dimerization.

Hink, M. A., de Vries, S. C. & Visser, A. J. W. G., 2011, Plant Kinases: Methods and Protocols, Methods in Molecular Biology. Dissmeyer, N. & Schnittger, A. (eds.). 295 p. (vol. 779).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

Human ERa and ERb splice variants: understanding their domain structure in relation to their biological roles in breast cancer cell proliferation

Sotoca Covaleda, A. M., Vervoort, J. J. M., Rietjens, I. & Gustafsson, J. A., 2011, Biochemistry. Ekinci, D. (ed.). Rijeka, Crotia: InTech, p. 142-160

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

2010

Structure-function of flavoenzymes of industrial interest

van Berkel, W. J. H., 2010, Oxidative enzymes as sustainable industrial biocatalysts. Feijoo, G. & Moreira, M. T. (eds.). p. 8-13

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

2008

Chemistry of flavoenzymes

van Berkel, W. J. H., 2008, Wiley Encyclopedia of Chemical Biology. Begley, T. (ed.). [S.l.]: John Wiley and Sons

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

Flavoproteins
NAD
Electrons
Oxidoreductases
Substrates

Effectors, their targets and host responses in the pathosystem Cladosporium fulvum-tomato

de Wit, P. J. G. M., Stergiopoulos, I., van t Klooster, J. W., van Esse, H. P., Fradin, E. F., Ellendorff, U., Gabriëls, S. H. E. J., Stulemeijer, I. J. E., Bolton, M. D., Borrás-Hidalgo, O., Tameling, W. I. L., Abd-El-Haliem, A. M., van den Berg-Velthuis, G. C. M., Vervoort, J. J. M., Boeren, S., Joosten, M. H. A. J. & Thomma, B. P. H. J., 2008, Biology of Plant-Microbe Interactions CD. Lorito, M., Woo, S. L. & Scala, F. (eds.). St. Paul, MN, USA, p. np (Biology of Plant-Microbe Interactions; no. 6).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

2006

Flavin-containing oxidative biocatalysts

Fraaije, M. W. & van Berkel, W. J. H., 2006, Biocatalysis in the Pharmaceutical and Biotechnology Industries. Patel, R. N. (ed.). New York: Marcel Dekker, p. 181-202 893 p.

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

Hyphenated Liquid Chromatography/Nuclear Magnetic Resonance Techniques

Exarchou, V., Gerothanassis, I. P., Vervoort, J. J. M. & van Beek, T. A., 2006, Natural Antioxidant Phenols. Sources, Structure-Activity Relationship, Current Trends in Analysis and Characterisation. Exarchou, V., Gerothanassis, I. P., Vervoort, J. & van Beek, T. A. (eds.). Research Signpost, p. 143-155

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

Identification of antioxidant peptides using SPOT synthesis.

Schurink, M., Boeriu, C. G. & van Berkel, W. J. H., 2006, Understanding biology using peptides. [S.l.]: S.n., p. 740-741

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

Lipid domains and rafts studied by time-resolved fluorescence microscopy

de Almeida, R. F. M., Hink, M. A., Borst, J. W., Prieto, M. & Visser, A. J. W. G., 2006, Biochemistry and Biophysics of Lipids. Pramanik, A. (ed.). Kerala, India: Transworld Research Network, p. 31-62

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

Protein-Protein Interactions In Vivo: Use of Biosensors Based on FRET

Borst, J. W., Nougalli Tonaco, I. A., Hink, M. A., van Hoek, A., Immink, R. G. H. & Visser, A. J. W. G., 2006, Reviews in Fluorescence 2006. Geddes, C. D. & Lakowicz, J. R. (eds.). New York: Kluwer Academic/Plenum Publishers, p. 341-355

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

2005

Fluorescence Spectroscopy

Jiskoot, W., Visser, A. J. W. G., Herron, J. N. & Sutter, M., 2005, Methods for Structural Analysis of Protein Pharmaceuticals. Jiskoot, W. & Crommelin, D. J. A. (eds.). Arlington, (AAPS series; no. 3).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

Inhibition of NAD(P)H: quinone oxidoreductase by flavonoids in living cells

Lee, Y. Y., Aarts, J. M. M. J. G., Rietjens, I. M. C. M. & van Berkel, W. J. H., 2005, Flavins and Flavoproteins 2005: Proceedings 15th International Symposium. [S.l.]: S.n.

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

Receptor-mediated endocytosis in plants

Russinova, E. T. & de Vries, S. C., 2005, Plant Endocytosis. Berlin, p. 103-115 (Plant cell monographs; no. 1).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

Somatic Embryogenesis

Mordhorst, A., Charbit, E. & de Vries, S. C., 2005, Plant Development and Biotechnology. Florida, USA: CRC, p. 201-209

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

2004

Some Developmental and Molecular Aspects of Somatic Embryogenesis (Nonzygotic Embryogenesis)

Mordhorst, A., Charbit, E. & de Vries, S. C., 28 Jul 2004, Plant Development and Biotechnology. Trigiano, R. N. & Gray, D. J. (eds.). 1 ed. Boca Raton: CRC Press, Taylor & Francis, 10 p.

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

somatic embryogenesis
embryogenesis
genes
Arabidopsis
cells
2003
15 Citations (Scopus)

Multiphoton microspectroscopy in living plant cells

Borst, J. W., Hink, M. A., van Hoek, A. & Visser, A. J. W. G., 2003, Multiphoton Microscopy in the Biomedical Sciences III. [S.l]: S.n., p. 231-238

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

The role of the Arabidopsis Somatic Embryogenesis Receptor-like Kinase 1 (AtSERK1) gene in embryogenic competence

de Vries, S. C., Shah, K., Rienties, I. M., Raz, V., Hecht, V. & Russinova, E. T., 2003, Plant Biotechnology 2002 and Beyond : Proceedings of the 10th IAPTC&B congress, June 23-28, 2002 Orlando, Florida, U.S.A. [S.l.]: Kluwer Academic Publishers, p. 269-272 619 p.

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

2002

Cofactor-dependent assembly of vanillyl-alcohol oxidase

Tahallah, N., Maier, C. S., van den Heuvel, R. H. H., van Berkel, W. J. H. & Heck, A. J. R., 2002, Flavins and Flavoproteins 2002. Perham, R., Chapman, S. & Scrutton, N. (eds.). p. 387-392

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

Imaging of oxidative stress in plant cells by quantitative fluorescence microscopy and spectroscopy

Borst, J. W., Uskova, M. A., Visser, N. V. & Visser, A. J. W. G., 2002, Fluorescence Spectroscopy, Imaging and Probes, New Tools in Chemical, Physical and Life Sciences. Kraayenhof, R., Visser, A. J. W. G. & Gerritsen, H. C. (eds.). Heidelberg: Springer Verlag, p. 337-348

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

Preparation and reconstitution of apoflavoproteins using a His-tag based immobilization method

Hefti, M. H., Milder, F. J., Boeren, S., Vervoort, J. & van Berkel, W. J. H., 2002, Flavins and Flavoproteins 2002. Perham, R., Chapman, S. & Scrutton, N. (eds.). p. 969-973

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

Regioselectivity of hydroxylation of para-hydroxybenzoate hydroxylase from Rhodococcus rhodnii 135 and Rhodococcus opacus 557

Jadan, A., Golovleva, L. A., Rietjens, I. M. C. M., Boeren, J. A. & van Berkel, W. J. H., 2002, Flavins and Flavoproteins 2002. Perham, R., Chapman, S. & Scrutton, N. (eds.). p. 963-968

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

Structure-function studies on fungal aryl-alcohol oxidase

Ferreira, P., Guillén, F., Ruiz-Dueñas, F. J., de Lacoba, M. G., Martinez, M. J., van Berkel, W. J. H. & Martínez, A. T., 2002, Flavins and Flavoproteins 2002. Perham, R., Chapman, S. & Scrutton, N. (eds.). p. 155-160

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

The flavin reductase component of phenol hydroxylase from Bacillus thermoglucosidasius A7

Westphal, A. H., van Berkel, W. J. H., Kirchner, U., Müller, R. & van den Heuvel, R. H. H., 2002, Flavins and Flavoproteins 2002. p. 1047-1052

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

Unfolding and limited proteolysis of 4-hydroxyacetophenone monooxygenase from Pseudomonas fluorescens ACB

Moonen, M. J. H., Vinogradov, A., Fraaije, M. W. & van Berkel, W. J. H., 2002, Flavins and Flavoproteins 2002. Perham, R., Chapman, S. & Scrutton, N. (eds.). p. 1011-1014

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

2001
5 Citations (Scopus)

Fluorescence correlation spectroscopy of flavins and flavoproteins

Visser, A. J. W. G., van den Berg, P. A. W., Hink, M. A. & Petushkov, V. N., 2001, Fluorescence Correlation Spectroscopy. Theory and Applications. Rigler, R. & Elson, E. S. (eds.). Berlin: Springer Berlin, p. 9-24

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

Tracking molecular dynamics of flavoproteins with time-resolved fluorescence spectroscopy

van den Berg, P. A. W. & Visser, A. J. W. G., 2001, New Trends in Fluorescence Spectroscopy. Valeur, B. & Brochon, J. C. (eds.). Berlin: Springer, p. 457-485

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

2000

Antioxidant activity (TEAC) of selected fruit and vegetable juices

Tyrakowska, B., Belkner, J., Rietjens, I. M. C. M. & Oszmianski, J., 2000, Fruit and Vegetable Juices and Drinks - Today and in the XXI Century. Michalczuk, L. & Pnocharski, W. (eds.). p. 363-371

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

6 Citations (Scopus)

Time-resolved Fluorescence Techniques Applied to Biological Interfaces

van Hoek, A. & Visser, A. J. W. G., 2000, Physical Chemistry of Biological Interfaces. Baszkin, A. & Norde, W. (eds.). New York: Marcel Dekker, p. 651-672

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

1999

Biocatalysis

Averill, B. A., Laane, C., Straathof, A. J. J. & Tramper, J., 1999, Catalysis : An integrated approach. van Santen, R. A. (ed.). Amsterdam: Elsevier, p. 343-371

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

Biological iron-sulfur clusters with catalytic activity

Hagen, W. R., 1999, Bioinorganic Catalysis - 2nd edition. Reedijk, J. & Bouwman, E. (eds.). New York: Marcel Dekker, p. 209-230

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

Circular dichroism of proteins in solutions and at interfaces

van Mierlo, C. P. M., de Jongh, H. H. J. & Visser, A. J. W. G., 1999, Physical Chemistry of Biological Interfaces. Baszkin, A. & Norde, W. (eds.). New York, USA: Marcel Dekker, p. 673-710

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

Effects of pH on the 13C and 15N NMR spectra of the Hydroquinone of Desulfovibrio vulgaris Flavodoxin and its G61A mutant

Yalloway, G. N., Mayhew, S. G., Boeren, S. J. & Vervoort, J., 1999, Flavins and Flavoproteins. Berlin: Rudolf Weber, p. 187-191

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

Flavoprotein kinetics

van Berkel, W. J. H., Benen, J. A. E., Eppink, M. H. M. & Fraaije, M. W., 1999, Methods in Molecular Biology. p. 131-85

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

1998

Characterization of membrane mimetic systems with fluorescence correlation spectroscopy.

Hink, M. & Visser, A. J. W. G., 1998, Applied fluorescence in chemistry, biology and medicine. Rettig, W., Strehmel, B., Schrader, S. & Seifert, H. (eds.). p. 101-118

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

Food flavours from yeast.

Stam, H., Hoogland, M. & Laane, C., 1998, Microbiology of fermented foods. 2nd edition. Wood, B. J. B. (ed.). p. 505-543

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic