Biochemistry

Search results

• Cooperative action of separate interaction domains promotes high-affinity DNA binding of Arabidopsis thaliana ARF transcription factors

  Fontana, M. (Contributor), Roosjen, M. (Contributor), García, I. C. (Contributor), van den Berg, W. (Contributor), Malfois, M. (Contributor), Boer, R. (Contributor), Weijers, D. (Contributor) & Hohlbein, J. (Contributor), Wageningen University & Research, 16 Nov 2022

  DOI: 10.5281/zenodo.7249508

  Dataset

• Determination of variability of fermentor-grown Aspergillus niger

  van der Veen, D. (Creator), Pimenta Ferreira De Oliveira, J. (Creator), van den Berg, W. (Creator) & de Graaff, L. (Creator), Wageningen University and Research Centre, 31 Dec 2008

  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE11405

  Dataset

• Development of the intestinal microbiota in preterm infants during the first six postnatal weeks determined by 454 pyrosequencing of the 16S rRNA gene

  Zwittink, R. D. (Creator), van Zoeren-Grobben, D. (Creator), Martin, R. (Creator), van Lingen, R. A. (Creator), Groot Jebbink, L. J. (Creator), Boeren, S. (Creator), Renes, I. B. (Creator), Van Elburg, R. M. (Creator), Belzer, C. (Creator) & Knol, J. (Creator), Wageningen University, 9 Mar 2017

  https://www.ebi.ac.uk/ena/data/view/PRJEB18915

  Dataset

• A Robust Auxin Response Network Controls Embryo and Suspensor Development through a bHLH Transcriptional Module

  Radoeva, T. M. (Creator), Boekschoten, M. (Creator), Hooiveld, G. (Creator) & Weijers, D. (Creator), Wageningen University, 3 Jan 2019

  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE69700

  Dataset

• Human fecal samples microbial 16S rRNA gene sequence

  van Dongen, K. (Creator), van der Zande, M. (Creator), Bruyneel, B. (Creator), Vervoort, J. (Creator), Rietjens, I. (Creator), Belzer, C. (Creator) & Beekmann, K. (Creator), Wageningen University, 1 Mar 2021

  https://www.ebi.ac.uk/ena/browser/view/PRJEB39539

  Dataset

• DEX Induced effector RiNLE1 expression inhibited plant defense genes expression

  Wang, P. (Creator), Jiang, H. (Creator), Boeren, S. (Creator), Dings, H. (Creator), Kulikova, O. (Creator), Bisseling, T. (Creator) & Limpens, E. (Creator), Wageningen University & Research, 4 Aug 2020

  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE155682

  Dataset

• Intestinimonas butyriciproducens af211 Genome sequencing

  Bui, N. (Creator), Ritari, J. (Creator), Boeren, S. (Creator), de Waard, P. (Creator), Plugge, C. (Creator) & de Vos, W. (Creator), Wageningen University & Research, 30 Nov 2015

  https://www.ncbi.nlm.nih.gov/bioproject/261376

  Dataset

• Cell type-specific expression atlas of the early Arabidopsis thaliana embryo

  Palovaara, J. P. J. (Creator), Wageningen University, 6 Nov 2017

  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE89100

  Dataset

• Nuclear and cellular expression data from the whole 16-cell stage Arabidopsis thaliana embryo and a cell type-specific expression atlas of the early Arabidopsis embryo

  Palovaara, J. P. J. (Creator), Wageningen University, 6 Nov 2017

  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE89101

  Dataset

• Mobile PEAR transcription factors integrate hormone and miRNA cues to prime cambial growth

  Smet, W. M. S. (Creator), Boekschoten, M. (Creator), Hooiveld, G. (Creator) & de Rybel, B. P. M. (Creator), Wageningen University, 9 Nov 2018

  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE115183

  Dataset

• A long look at short prokaryotic Argonautes

  Koopal, B. (Creator), Mutte, S. (Creator) & Swarts, D. (Creator), Wageningen University & Research, 17 Nov 2022

  DOI: 10.17632/mpgn9by7z2

  Dataset

• Changes over lactation in breast milk serum proteins

  Zhang, L. (Creator), de Waard, M. (Creator), Verheijen, H. (Creator), Boeren, S. (Creator), Hageman, J. (Creator), van Hooijdonk, A. C. M. (Creator), Vervoort, J. J. M. (Creator), van Goudoever, J. B. (Creator) & Hettinga, K. (Creator), Wageningen University & Research, 12 Feb 2016

  https://www.ebi.ac.uk/pride/archive/projects/PXD003465

  Dataset

• Probing DNA - transcription factor interactions using single-molecule fluorescence detection in nanofluidic devices

  Fontana, M. (Creator), Ivanovaite, Š. (Creator), Lindhoud, S. (Creator), van der Wijk, E. (Creator), Mathwig, K. (Creator), van den Berg, W. (Creator), Weijers, D. (Creator) & Hohlbein, J. (Creator), Wageningen University & Research, 16 Jul 2021

  DOI: 10.5281/zenodo.5110578

  Dataset

• Integrative analysis of gut microbiota composition, host colonic gene expression and intraluminal metabolites in aging C57BL/6J mice

  van der Lugt, B. (Creator), Rusli, F. (Creator), Lute, C. (Creator), Lamprakis, A. (Creator), Salazar, E. (Creator), Boekschoten, M. (Creator), Hooiveld, G. (Creator), Müller, M. (Creator), Vervoort, J. (Creator), Kersten, S. (Creator), Belzer, C. (Creator), Kok, D. (Creator) & Steegenga, W. (Creator), Wageningen University & Research, 17 Apr 2018

  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE113257

  Dataset

• Disentangling the lipid divide: Identification of key enzymes for the biosynthesis of Membrane-spanning and Ether lipids in Bacteria

  Sahonero-Canavesi, D. X. (Creator), Siliakus, M. (Creator), Asbun, A. A. (Creator), Koenen, M. (Creator), von Meijenfeldt, B. (Creator), Boeren, S. (Creator), Bale, N. (Creator), Engelman, J. (Creator), Fiege, K. (Creator), van Schijndel, L. S. (Creator), Sinninghe Damsté, J. S. (Creator) & Villanueva, L. (Creator), 30 Sept 2022

  DOI: 10.5281/zenodo.6966461

  Dataset

• Data underlying the publication: "A mammalian commensal of the oropharyngeal cavity produces antibiotic and antiviral valinomycin in vivo"

  Gaiser, R. (Creator), Ferrando, L. (Creator), Oddo, A. (Creator), Pereira, M. (Creator), Boekhorst, J. (Creator), Guan, X. (Creator), Molist, F. (Creator), Fernandez Gutierrez, M. (Creator), Fredriksen, S. (Creator), Bryant, C. E. (Creator), Petras, D. (Creator), Dorrestein, P. C. (Creator), Boeren, S. (Creator), Medema, M. (Creator), Hill, C. (Creator), Kleerebezem, M. (Creator), van Baarlen, P. (Creator) & Wells, J. (Creator), Wageningen University & Research, 28 Sept 2023

  DOI: 10.17026/dans-zf3-7tt4

  Dataset

• Transcription profiling by array of Arabidopsis mutant for mp after treatment with auxin

  Weijers, D. (Creator), Wageningen UR, 1 May 2010

  https://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-1948/

  Dataset

• Lifelong calorie restriction and markers of colonic health in aging mice

  Kok, D. (Creator), Rusli, F. (Creator), van der Lugt, B. M. (Creator), Lute, C. (Creator), Laghi, L. (Creator), Salvioli, S. (Creator), Picone, G. (Creator), Franceschi, C. (Creator), Smidt, H. (Creator), Vervoort, J. J. M. (Creator), Kampman, E. (Creator), Müller, M. (Creator) & Steegenga, W. (Creator), Wageningen University, 27 Mar 2018

  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE100701

  Dataset

• Nuclear and cellular expression data from the whole 16-cell stage Arabidopsis thaliana embryo

  Palovaara, J. P. J. (Creator), Wageningen University, 6 Nov 2017

  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE89098

  Dataset

• Genome sequence of Desulfovibrio sp. G11

  Sanchez Andrea, I. (Creator), Alves Guedes, I. (Creator), Hornung, B. (Creator), Boeren, S. (Creator), Lawson, C. E. (Creator), Machado de Sousa, D. (Creator), Bar-Even, A. (Creator), Claassens, N. J. H. P. (Creator) & Stams, F. (Creator), Wageningen University & Research, 11 Aug 2020

  https://www.ebi.ac.uk/ena/browser/view/PRJEB22313

  Dataset

• SPARTA-related RNA and DNA

  Koopal, B. (Creator), Potocnik, A. (Creator), Mutte, S. (Creator), Aparicio-Maldonado, C. (Creator), Lindhoud, S. (Creator), Vervoort, J. J. M. (Creator), Brouns, S. J. J. (Creator) & Swarts, D. (Creator), Wageningen University & Research, 20 Dec 2021

  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE191271

  Dataset

• Proteomics of Tsetse salivary glands before and after infection with Trypanosoma parasite

  Boeren, S. (Creator), Wageningen University & Research, 8 Aug 2016

  http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD004577

  Dataset

• A molecular framework for control of oriented cell division in the Arabidopsis embryo

  Weijers, D. (Creator), Wageningen University, 5 Oct 2021

  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE165986

  Dataset

• DOF2.1 controls vascular cell proliferation downstream of TMO5/LHW

  Smet, W. (Creator), Sevilem, I. (Creator), de Luis Balaguer, M. A. (Creator), Wybouw, B. (Creator), Mor, E. (Creator), Miyashima, S. (Creator), Blob, B. (Creator), Roszak, P. (Creator), Jacobs, T. B. (Creator), Boekschoten, M. (Creator), Hooiveld, G. (Creator), Sozzani, R. (Creator), Helariutta, Y. (Creator) & De Rybel, B. (Creator), Wageningen University & Research, 10 Jul 2018

  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE116858

  Dataset

• Modulating the gut microbiota by dietary guar gum protects against diet-induced obesity but promotes non-alcoholic steatohepatitis in mice

  Janssen, A. (Creator), Houben, T. (Creator), Katiraei, S. (Creator), Boutens, L. (Creator), van der Bolt, N. (Creator), Wang, Z. (Creator), Brown, J. M. (Creator), Hazen, S. L. (Creator), Shiri-Sverdlov, R. (Creator), Willems van Dijk, K. (Creator), Vervoort, J. (Creator), Stienstra, R. (Creator), Hooiveld, G. (Creator) & Kersten, S. (Creator), Wageningen University, 6 Jun 2017

  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76087

  Dataset