Bacterial Genetics

Keeva Loughlin, MSc
- Bacterial Genetics - PhD candidate
- Nutritional Biology - PhD candidate
- VLAG - PhD candidate
Person: PhD-student
Richard van Kranenburg
- VLAG
- Bacterial Genetics - Special Professor
Person: Academic

A filter based whole-cell sensor design for measuring in bioreactors
Karcz, A., Tibbe, A., Besseling, T., van Nieuwstadt, J., Ozer-Bergman, G., Asin-Garcia, E., Suarez Diez, M. & Staals, R., Mar 2025, In: New Biotechnology. 85, p. 157-157
Research output: Contribution to journal › Abstract › Academic

Open Access
A multi-domain lifestyle intervention in multiple sclerosis: a longitudinal observational study
Nauta, I. M., Loughlin, K. N. M., Gravesteijn, A. S., van Wegen, J., Hofman, R. P., Wilmsen, N., Coles, E., van Kempen, Z. L. E., Killestein, J., van Oosten, B. W., Strijbis, E. M. M., Uitdehaag, B. M. J. & de Jong, B. A., 1 Jul 2025, In: Journal of Neurology. 272, 7, 476.
Research output: Contribution to journal › Article › Academic › peer-review

Open Access
1 Citation (Scopus)
An updated evolutionary classification of CRISPR–Cas systems including rare variants
Makarova, K. S., Shmakov, S. A., Wolf, Y. I., Mutz, P., Altae-Tran, H., Beisel, C. L., Brouns, S. J. J., Charpentier, E., Cheng, D., Doudna, J., Haft, D. H., Horvath, P., Moineau, S., Mojica, F. J. M., Pausch, P., Pinilla-Redondo, R., Shah, S. A., Siksnys, V., Terns, M. P. & Tordoff, J. & 9 others, Venclovas, Č., White, M. F., Yakunin, A. F., Zhang, F., Garrett, R. A., Backofen, R., van der Oost, J., Barrangou, R. & Koonin, E. V., 2025, In: Nature Microbiology. 10, p. 3346-3361
Research output: Contribution to journal › Article › Academic › peer-review

Open Access
7 Citations (Scopus)

Drivers and Determinants of Strain Dynamics Following Faecal Microbiota Transplantation
Schmidt, T. S. B. (Creator), Li, S. S. (Creator), Maistrenko, O. M. (Creator), Akkani, W. (Creator), Coelho, L. P. (Creator), Dolai, S. (Creator), Fullam, A. (Creator), Glazek, A. (Creator), Hercog, R. (Creator), Herrema, H. (Creator), Jung, F. (Creator), Kandels, S. (Creator), Orakov, A. (Creator), Van Rossum, T. (Creator), Benes, V. (Creator), Borody, T. J. (Creator), de Vos, W. (Creator), Ponsioen, C. Y. (Creator), Nieuwdorp, M. (Creator) & Bork, P. (Creator), European Molecular Biology Laboratory, 28 Sept 2021
DOI: 10.5281/zenodo.5534162
Dataset
Rationally designed and assembled a Diet based Minimal Microbiome (Db-MM) consisting of ten core gut bacteria that convert dietary fiber to short-chain fatty acids
Shetty, S. (Creator), Kuipers, B. (Creator), Atashgahi, S. (Creator), Aalvink, S. (Creator), Smidt, H. (Creator) & de Vos, W. (Creator), Wageningen University, 12 Apr 2021
https://www.ebi.ac.uk/ena/browser/view/PRJEB36253?show=reads
Dataset
Conserved symbiosis between Akkermansia muciniphila and its mammalian host
Geerlings, S. (Creator), Ouwerkerk, J. (Creator), Koehorst, J. (Creator), Ritari, J. (Creator), Aalvink, S. (Creator), Stecher, B. (Creator), Schaap, P. (Creator), Paulin, L. (Creator), de Vos, W. (Creator) & Belzer, C. (Creator), Wageningen University, 28 Jul 2017
https://www.ebi.ac.uk/ena/browser/view/PRJEB21068
Dataset

The applicability of in house designed easy-operable LAMP and LAMP/CRISPR-Cas assays for a variety of targets in real-life food samples.
Voorhuijzen, M. (Speaker), Bonants, P. (Contributor), Kurm, V. (Contributor), van Amerongen, A. (Contributor), de Groot, A. (Contributor), Steens, J. (Contributor) & Willemsen, P. (Contributor)
3 Oct 2022 → 5 Oct 2022
Activity: Talk/presentation/lecture › Oral presentation › Academic

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