Research Output 2000 2020

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2020

Absolute quantitation of microbes using 16S rRNA gene metabarcoding: A rapid normalization of relative abundances by quantitative PCR targeting a 16S rRNA gene spike-in standard

Zemb, O., Achard, C. S., Hamelin, J., De Almeida, M. L., Gabinaud, B., Cauquil, L., Verschuren, L. M. G. & Godon, J. J., 11 Jan 2020, In : MicrobiologyOpen. e977.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
rRNA Genes
Polymerase Chain Reaction
DNA
Feces

Can greenhouse gases in breath be used to genetically improve feed efficiency of dairy cows?

Difford, G. F., Løvendahl, P., Veerkamp, R. F., Bovenhuis, H., Visker, M. H. P. W., Lassen, J. & de Haas, Y., 15 Jan 2020, In : Journal of Dairy Science. 103, 3, p. 2442-2459

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
greenhouse gases
feed conversion
dairy cows
Gases
Denmark
1 Citation (Scopus)

Exploration of variance, autocorrelation, and skewness of deviations from lactation curves as resilience indicators for breeding

Poppe, M., Veerkamp, R. F., van Pelt, M. L. & Mulder, H. A., Feb 2020, In : Journal of Dairy Science. 103, 2, p. 1667-1684

Research output: Contribution to journalArticleAcademicpeer-review

lactation curve
autocorrelation
Lactation
Breeding
Fertility

Functional and population genetic features of copy number variations in two dairy cattle populations

Lee, Y. L., Bosse, M., Mullaart, E., Groenen, M. A. M., Veerkamp, R. F. & Bouwman, A. C., 28 Jan 2020, In : BMC Genomics. 21, 1, 89.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Linkage Disequilibrium
Population Genetics
Single Nucleotide Polymorphism
Population
Genes

Genomic regions associated with muscularity in beef cattle differ in five contrasting cattle breeds

Doyle, J. L., Berry, D. P., Veerkamp, R. F., Carthy, T. R., Evans, R. D., Walsh, S. W. & Purfield, D. C., 30 Jan 2020, In : Genetics, selection, evolution : GSE. 52, 1, 1 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Quantitative Trait Loci
cattle breeds
beef cattle
cattle
genomics

Machine learning to further improve the decision which boar ejaculates to process into artificial insemination doses

Kamphuis, C., Duenk, P., Veerkamp, R. F., Visser, B., Singh, G., Nigsch, A., De Mol, R. M. & Broekhuijse, M. L. W. J., Mar 2020, In : Theriogenology. 144, p. 112-121 10 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Artificial Insemination
artificial intelligence
boars
artificial insemination
Semen Analysis

Predicting survival in dairy cattle by combining genomic breeding values and phenotypic information

van der Heide, E. M. M., Veerkamp, R. F., van Pelt, M. L., Kamphuis, C. & Ducro, B. J., Jan 2020, In : Journal of Dairy Science. 103, 1, p. 556-571

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
breeding value
dairy cattle
Breeding
heifers
genomics

Prediction of nutrient digestibility in grower-finisher pigs based on faecal microbiota composition

Verschuren, L. M. G., Schokker, D., Bergsma, R., Jansman, A. J. M., Molist, F. & Calus, M. P. L., Jan 2020, In : Journal of Animal Breeding and Genetics. 137, 1, p. 23-35

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
feeder pigs
Microbiota
Swine
digestibility
Food

The economic value of R0 for selective breeding against microparasitic diseases

Janssen, K. & Bijma, P., 31 Jan 2020, In : Genetics, selection, evolution : GSE. 52, 1, 1 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
selective breeding
selection methods
economic valuation
genetic improvement
Economics
2019
3 Citations (Scopus)

A mechanistic model for studying the initiation of anguillid vitellogenesis by comparing the European eel (Anguilla anguilla) and the shortfinned eel (A. australis)

Jéhannet, P., Kruijt, L., Damsteegt, E. L., Swinkels, W., Heinsbroek, L. T. N., Lokman, P. M. & Palstra, A. P., 20 Feb 2019, In : General and Comparative Endocrinology. 279, p. 129-138

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Anguilla
Vitellogenesis
Eels
Anguilla anguilla
mechanistic models

A second-level diagonal preconditioner for single-step SNPBLUP

Vandenplas, J., Calus, M. P. L., Eding, H. & Vuik, C., 25 Jun 2019, In : Genetics Selection Evolution. 51, 30.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
single nucleotide polymorphism
Single Nucleotide Polymorphism
polymorphism
eigenvalue
methodology

Assessment of sire contribution and breed-of-origin of alleles in a three-way crossbred broiler dataset

Calus, M. P. L., Vandenplas, J., Hulsegge, I., Borg, R., Henshall, J. M. & Hawken, R., 1 Dec 2019, In : Poultry Science. 98, 12, p. 6270-6280 11 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
sires
purebreds
crossbreds
broiler chickens
alleles
1 Citation (Scopus)

Boosted trees to predict pneumonia, growth, and meat percentage of growing-finishing pigs

Mollenhorst, H., Ducro, B. J., de Greef, K. H., Hulsegge, I. & Kamphuis, C., 3 Oct 2019, In : Journal of Animal Science. 97, 10, p. 4152-4159

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Meat
pneumonia
finishing
Pneumonia
Swine

Can breeders solve mortality due to feather pecking in laying hens?

Ellen, E. D. & Bijma, P., 1 Sep 2019, In : Poultry Science. 98, 9, p. 3431-3442 12 p.

Research output: Contribution to journalArticleAcademicpeer-review

feather pecking
laying hens
marker-assisted selection
breeding
poultry industry
1 Citation (Scopus)

Cardiac and Skeletal Muscle Transcriptome Response to Heat Stress in Kenyan Chicken Ecotypes Adapted to Low and High Altitudes Reveal Differences in Thermal Tolerance and Stress Response

Srikanth, K., Kumar, H., Park, W., Byun, M., Lim, D., Kemp, S., te Pas, M. F. W., Kim, J. M. & Park, J. E., 11 Oct 2019, In : Frontiers in Genetics. 10, 993.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Ecotype
Heat-Shock Response
Transcriptome
Chickens
Myocardium

Characterization of genetic diversity conserved in the gene bank for dutch cattle breeds

van Breukelen, A. E., Doekes, H. P., Windig, J. J. & Oldenbroek, K., 28 Nov 2019, In : Diversity. 11, 12, p. 1-13 13 p., 229.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
gene banks
cattle breeds
cattle
bulls
genetic variation
3 Citations (Scopus)

Comparative transcriptome analysis of Ethiopian indigenous chickens from low and high altitudes under heat stress condition reveals differential immune response

Park, W., Srikanth, K., Lim, D., Park, M., Hur, T., Kemp, S., Dessie, T., Kim, M. S., Lee, S. R., te Pas, M. F. W., Kim, J. M. & Park, J. E., Feb 2019, In : Animal Genetics. 50, 1, p. 42-53

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Gene Expression Profiling
transcriptomics
heat stress
Chickens
Hot Temperature
2 Citations (Scopus)
Open Access
Lactation
Holstein
lactation
prediction
cattle

Comparison of methods to measure methane for use in genetic evaluation of dairy cattle

Garnsworthy, P. C., Difford, G. F., Bell, M. J., Bayat, A. R., Huhtanen, P., Kuhla, B., Lassen, J., Peiren, N., Pszczola, M., Sorg, D., Visker, M. H. P. W. & Yan, T., 1 Oct 2019, In : Animals. 9, 10, 837.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Methane
methane
dairy cattle
methodology
sulfur hexafluoride
1 Citation (Scopus)

Cortisol acting through the glucocorticoid receptor is not involved in exercise-enhanced growth, but does affect the white skeletal muscle transcriptome in zebrafish (danio rerio)

Palstra, A. P., Mendez, S., Dirks, R. P. & Schaaf, M. J. M., 14 Jan 2019, In : Frontiers in Physiology. 10, JAN, 01889.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Glucocorticoid Receptors
Zebrafish
Transcriptome
Hydrocortisone
Skeletal Muscle

Cryoconservation of animal genetic resources in europe and two African countries: A gap analysis

Leroy, G., Boettcher, P., Besbes, B., Danchin-Burge, C., Baumung, R. & Hiemstra, S. J., 13 Dec 2019, In : Diversity. 11, 12, 11 p., 240.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
animal genetic resources
genetic resource
Domestic Animals
Livestock
breeds
1 Citation (Scopus)

Development of a genetic tool for determining breed purity of cattle

Hulsegge, I., Schoon, M., Windig, J., Neuteboom, M., Hiemstra, S. J. & Schurink, A., 1 May 2019, In : Livestock Science. 223, p. 60-67 8 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
purity
breeds
cattle
Pedigree
purebreds

Dietary ingredient composition alters faecal characteristics and waste production in common carp reared in recirculation system

Antony Jesu Prabhu, P., Fountoulaki, E., Maas, R., Heinsbroek, L. T. N., Eding, E. H., Kaushik, S. J. & Schrama, J. W., 15 Oct 2019, In : Aquaculture. 512, 734357.

Research output: Contribution to journalArticleAcademicpeer-review

sunflower cake
feces composition
recirculating aquaculture systems
digestibility
Cyprinus carpio

DNA-test for rare cow breeds

Schurink, A., 2019, In : Wageningen World. 2019, 1, p. 7-7

Research output: Contribution to journalArticleProfessional

Open Access

Economic optimization of full-sib test group size and genotyping effort in a breeding program for Atlantic salmon

Janssen, K., Saatkamp, H. W., Calus, M. P. L. & Komen, H., 3 Sep 2019, In : Genetics Selection Evolution. 51, 1, 49.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Salmo salar
Budgets
group size
genotyping
Breeding
1 Citation (Scopus)

Effects of dietary supplementation of Gracilaria sp. extracts on fillet quality, oxidative stress, and immune responses in European seabass (Dicentrarchus labrax)

Peixoto, M. J., Magnoni, L., Gonçalves, J. F. M., Twijnstra, R. H., Kijjoa, A., Pereira, R., Palstra, A. P. & Ozório, R. O. A., Feb 2019, In : Journal of Applied Phycology. 31, 1, p. 761-770

Research output: Contribution to journalArticleAcademicpeer-review

fillet quality
Gracilaria
Dicentrarchus labrax
immune response
dietary supplements
1 Citation (Scopus)

Efficient and accurate computation of base generation allele frequencies

Aldridge, M. N., Vandenplas, J. & Calus, M. P. L., Feb 2019, In : Journal of Dairy Science. 102, 2, p. 1364-1373

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Gene Frequency
gene frequency
least squares
Least-Squares Analysis
methodology

Enteric methane emission from Jersey cows during the spring transition from indoor feeding to grazing

Szalanski, M., Kristensen, T., Difford, G., Lassen, J., Buitenhuis, A. J., Pszczola, M. & Løvendahl, P., Jul 2019, In : Journal of Dairy Science. 102, 7, p. 6319-6329

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Methane
Jersey
Carbon Monoxide
methane
grazing

Estimation of Muscle Scores of Live Pigs Using a Kinect Camera

Alsahaf, A., Azzopardi, G., Ducro, B., Hanenberg, E., Veerkamp, R. F. & Petkov, N., 24 Apr 2019, In : IEEE Access. 7, p. 52238-52245 8 p., 8698234.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Muscle
Cameras
Farms
Animals
Classifiers
1 Citation (Scopus)

Genetic analysis of udder conformation traits derived from automatic milking system recording in dairy cows

Poppe, M., Mulder, H. A., Ducro, B. J. & de Jong, G., Feb 2019, In : Journal of Dairy Science. 102, 2, p. 1386-1396

Research output: Contribution to journalArticleAcademicpeer-review

Animal Mammary Glands
udders
milking
genetic techniques and protocols
dairy cows

Genetic improvement of canine hip dysplasia through sire selection across countries

Wang, S., Strandberg, E., Viklund, Windig, J. J., Malm, S., Lewis, T., Laloë, D. & Leroy, G., 1 Jun 2019, In : Veterinary Journal. 248, p. 18-24 7 p.

Research output: Contribution to journalArticleAcademicpeer-review

Canine Hip Dysplasia
canine hip dysplasia
Hip Dislocation
genetic improvement
sires

Genetic parameters for atypical reproductive patterns in dairy cows estimated from in-line milk progesterone profiles

van Binsbergen, R., Bouwman, A. C. & Veerkamp, R. F., Dec 2019, In : Journal of Dairy Science. 102, 12, p. 11104-11115

Research output: Contribution to journalArticleAcademicpeer-review

Progesterone
milk yield
progesterone
Milk
dairy cows
1 Citation (Scopus)

Genome-wide association studies for heat stress response in Bos taurus × Bos indicus crossbred cattle

Otto, P. I., Guimarães, S. E. F., Verardo, L. L., Azevedo, A. L. S., Vandenplas, J., Sevillano, C. A., Marques, D. B. D., de Fatima A. Pires, M., de Freitas, C., Verneque, R. S., Martins, M. F., Panetto, J. C. C., Carvalho, W. A., Gobo, D. O. R., da Silva, M. V. G. B. & Machado, M. A., Sep 2019, In : Journal of Dairy Science. 102, 9, p. 8148-8158 11 p.

Research output: Contribution to journalArticleAcademicpeer-review

Heat-Shock Response
Genome-Wide Association Study
zebu
crossbreds
Temperature

Genome-wide association study for insect bite hypersensitivity susceptibility in horses revealed novel associated loci on chromosome 1

Shrestha, M., Solé, M., Ducro, B. J., Sundquist, M., Thomas, R., Schurink, A., Eriksson, S. & Lindgren, G., 5 Sep 2019, In : Journal of Animal Breeding and Genetics.

Research output: Contribution to journalArticleAcademicpeer-review

Insect Bites and Stings
Chromosomes, Human, Pair 1
Genome-Wide Association Study
hypersensitivity
Horses
2 Citations (Scopus)

Genomic analysis on pygmy hog reveals extensive interbreeding during wild boar expansion

Liu, L., Bosse, M., Megens, H-J., Frantz, L. A. F., Lee, Y. L., Irving-Pease, E. K., Narayan, G., Groenen, M. A. M. & Madsen, O., 1 Dec 2019, In : Nature Communications. 10, 1992.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Sus scrofa
genome
admixtures
Genes
expansion

Genomic prediction for crossbred performance using metafounders

van Grevenhof, E. M., Vandenplas, J. & Calus, M. P. L., 1 Feb 2019, In : Journal of Animal Science. 97, 2, p. 548-558

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Genetic Hybridization
Breeding
crossbreds
Swine
Genetic Phenomena

Genomic regions associated with IgE levels against culicoides spp. Antigens in three horse breeds

François, L., Hoskens, H., Velie, B. D., Stinckens, A., Tinel, S., Lamberigts, C., Peeters, L., Savelkoul, H. F. J., Tijhaar, E., Lindgren, G., Janssens, S., Ducro, B. J., Buys, N. & Schurink, A., 1 Aug 2019, In : Genes. 10, 8, 597.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Ceratopogonidae
Insect Bites and Stings
Immunoglobulin E
Horses
Hypersensitivity
Open Access
Homeostasis
Intestinal Mucosa
Organoids
Intestines
Maintenance
1 Citation (Scopus)

Hox gene expression profiles during embryonic development of common sole

Kavouras, M., Malandrakis, E. E., Golomazou, E., Konstantinidis, I., Blom, E., Palstra, A. P., Anastassiadis, K., Panagiotaki, P. & Exadactylos, A., 25 Apr 2019, In : Animal Biology. 69, 2, 16 p.

Research output: Contribution to journalArticleAcademicpeer-review

gene expression
breeding stock
embryonic development
gene
embryogenesis

Impact of merging commercial breeding lines on the genetic diversity of Landrace pigs

Hulsegge, I., Calus, M., Hoving-Bolink, R., Lopes, M., Megens, H. J. & Oldenbroek, K., 29 Oct 2019, In : Genetics Selection Evolution. 51, 1, 60.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Dutch Landrace
breeding lines
pig
landraces
Breeding
2 Citations (Scopus)
Open Access
Genome-Wide Association Study
Quantitative Trait Loci
pig
Single Nucleotide Polymorphism
genotype

Inbreeding depression due to recent and ancient inbreeding in Dutch Holstein-Friesian dairy cattle

Doekes, H. P., Veerkamp, R. F., Bijma, P., de Jong, G., Hiemstra, S. J. & Windig, J. J., 27 Sep 2019, In : Genetics, selection, evolution : GSE. 51, 1, 16 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
inbreeding depression
Inbreeding
inbreeding
dairy cattle
cattle

Inter- and intra-breed genome-wide copy number diversity in a large cohort of European equine breeds

Solé, M., Ablondi, M., Binzer-Panchal, A., Velie, B. D., Hollfelder, N., Buys, N., Ducro, B. J., François, L., Janssens, S., Schurink, A., Viklund, Å., Eriksson, S., Isaksson, A., Kultima, H., Mikko, S. & Lindgren, G., 22 Oct 2019, In : BMC Genomics. 20, 1, 1 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Horses
Genome
Single Nucleotide Polymorphism
Molecular Sequence Annotation
Population

Invited review: Big Data in precision dairy farming

Lokhorst, C., De Mol, R. M. & Kamphuis, C., Jul 2019, In : Animal. 13, 7, p. 1519-1528

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
dairy farming
farm area
learning
taxonomy
farms
1 Citation (Scopus)

Invited review: Determination of large-scale individual dry matter intake phenotypes in dairy cattle

Seymour, D. J., Cánovas, A., Baes, C. F., Chud, T. C. S., Osborne, V. R., Cant, J. P., Brito, L. F., Gredler-Grandl, B., Finocchiaro, R., Veerkamp, R. F., de Haas, Y. & Miglior, F., Sep 2019, In : Journal of Dairy Science. 102, 9, p. 7655-7663

Research output: Contribution to journalArticleAcademicpeer-review

dry matter intake
dairy cattle
Phenotype
phenotype
feed intake
4 Citations (Scopus)

Modeling the Sensitivity of Aquatic Macroinvertebrates to Chemicals Using Traits

Van Den Berg, S. J. P., Baveco, H., Butler, E., De Laender, F., Focks, A., Franco, A., Rendal, C. & Van Den Brink, P. J., 22 May 2019, In : Environmental Science and Technology. 53, 10, p. 6025-6034 10 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
macroinvertebrate
modeling
ecotoxicology
Life cycle
Animals
6 Citations (Scopus)

Opportunities to improve resilience in animal breeding programs

Berghof, T. V. L., Poppe, M. & Mulder, H. A., 14 Jan 2019, In : Frontiers in Genetics. 9, 15 p., 692.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Breeding
Livestock
Economics
Domestic Animals
Phenotype
3 Citations (Scopus)

Optimizing ex situ genetic resource collections for European livestock conservation

De Oliveira Silva, R., Ahmadi, B. V., Hiemstra, S. J. & Moran, D., Jan 2019, In : Journal of Animal Breeding and Genetics. 136, 1, p. 63-73

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
gene banks
Livestock
genetic resources
livestock
Costs and Cost Analysis

Optimizing selection of the reference population for genotype imputation from array to sequence variants

Butty, A. M., Sargolzaei, M., Miglior, F., Stothard, P., Schenkel, F. S., Gredler-Grandl, B. & Baes, C. F., 31 May 2019, In : Frontiers in Genetics. 10, 510.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Genotype
Population
Haplotypes
Linkage Disequilibrium
Population Density
1 Citation (Scopus)

Physiological response of temperature shocks in turbot and sole

Foss, A., Imsland, A. K. D., van de Vis, H., Abbink, W., Lambooij, B. & Roth, B., 2019, In : Journal of Applied Aquaculture. 31, p. 34-47

Research output: Contribution to journalArticleAcademicpeer-review

turbot
physiological response
potassium
blood
sodium