Research Output

2020

Absolute quantitation of microbes using 16S rRNA gene metabarcoding: A rapid normalization of relative abundances by quantitative PCR targeting a 16S rRNA gene spike-in standard

Zemb, O., Achard, C. S., Hamelin, J., De Almeida, M. L., Gabinaud, B., Cauquil, L., Verschuren, L. M. G. & Godon, J. J., Mar 2020, In : MicrobiologyOpen. 9, 3, e977.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Between-herd variation in cow resilience and relations to management

Poppe, H. W. M., Kamphuis, C., Veerkamp, R. F. & Mulder, H. A., 14 Feb 2020, WIAS Annual Conference 2020: Frontiers in Animal Sciences. WIAS, p. 23-23

Research output: Chapter in Book/Report/Conference proceedingAbstract

Open Access

Can greenhouse gases in breath be used to genetically improve feed efficiency of dairy cows?

Difford, G. F., Løvendahl, P., Veerkamp, R. F., Bovenhuis, H., Visker, M. H. P. W., Lassen, J. & de Haas, Y., Mar 2020, In : Journal of Dairy Science. 103, 3, p. 2442-2459

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Cryopreservation of equine oocytes: Looking into the crystal ball

De Coster, T., Velez, D. A., Van Soom, A., Woelders, H. & Smits, K., 1 Mar 2020, In : Reproduction, Fertility and Development. 32, 5, p. 453-467 15 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Effects of feeding and manure management interventions on technical and environmental performance of Indonesian dairy farms: Results of a pilot study in Lembang Sub-District, West Java

de Vries, M., Wouters, B., Suharyono, D., Sutiarto, A. & Berasa, S. E., 2020, Wageningen: Wageningen Livestock Research. 37 p. (Wageningen Livestock Research report; no. 1237)

Research output: Book/ReportReportProfessional

Open Access

Exploration of variance, autocorrelation, and skewness of deviations from lactation curves as resilience indicators for breeding

Poppe, M., Veerkamp, R. F., van Pelt, M. L. & Mulder, H. A., Feb 2020, In : Journal of Dairy Science. 103, 2, p. 1667-1684

Research output: Contribution to journalArticleAcademicpeer-review

1 Citation (Scopus)

First Observation of a Spontaneously Matured Female European Eel (Anguilla anguilla)

Palstra, A. P., Jéhannet, P., Swinkels, W., Heinsbroek, L. T. N., Lokman, P. M., Vesala, S., Tulonen, J., Lakka, T. & Saukkonen, S., 11 Feb 2020, In : Scientific Reports. 10, 1, 2339.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Functional and population genetic features of copy number variations in two dairy cattle populations

Lee, Y. L., Bosse, M., Mullaart, E., Groenen, M. A. M., Veerkamp, R. F. & Bouwman, A. C., 28 Jan 2020, In : BMC Genomics. 21, 1, 89.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Genome-wide association study for insect bite hypersensitivity susceptibility in horses revealed novel associated loci on chromosome 1

Shrestha, M., Solé, M., Ducro, B. J., Sundquist, M., Thomas, R., Schurink, A., Eriksson, S. & Lindgren, G., Mar 2020, In : Journal of Animal Breeding and Genetics. 137, 2, p. 223-233

Research output: Contribution to journalArticleAcademicpeer-review

Genomic regions associated with muscularity in beef cattle differ in five contrasting cattle breeds

Doyle, J. L., Berry, D. P., Veerkamp, R. F., Carthy, T. R., Evans, R. D., Walsh, S. W. & Purfield, D. C., 30 Jan 2020, In : Genetics, selection, evolution : GSE. 52, 1, 1 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)

Genomic Regions Associated With Skeletal Type Traits in Beef and Dairy Cattle Are Common to Regions Associated With Carcass Traits, Feed Intake and Calving Difficulty

Doyle, J. L., Berry, D. P., Veerkamp, R. F., Carthy, T. R., Walsh, S. W., Evans, R. D. & Purfield, D. C., 4 Feb 2020, In : Frontiers in Genetics. 11, 20.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Identification de biomarqueurs de l'efficacité alimentaire chez le porc en croissance

Translated title of the contribution: Identifying biomarkers as new traits for feed efficiency in growing pigsGondret, F., Skou Hedeman, M., Messad, F., Verschuren, L., Wang, J., de la Fuente, G., Gilbert, H. & Jansman, A. J. M., 2020, 52èmes Journées de la Recherche Porcine: 4 et 5 février 2020. IFIP, INRA, p. 20-24

Research output: Chapter in Book/Report/Conference proceedingConference paper

Open Access

Impact of preselection varies across genetic evaluation models

Jibrila, I., Vandenplas, J., ten Napel, J., Veerkamp, R. F. & Calus, M. P. L., 14 Feb 2020, Wias Annual Conference 2020: Frontiers in Animal Sciences. WIAS, p. 47-47

Research output: Chapter in Book/Report/Conference proceedingAbstract

Open Access

KB DDHT project 8: Non-destructive and non-invasive sensor technologies in food supply chains : project deliverables 1.1-1.4

Bouzembrak, Y., Chauhan, A., Daniels, F., Gavai, A., Gonzalez Rojas, J., Kamphuis, C., Marvin, H., Meesters, L., Mishra, P., Mueller-Maatsch, J., Ouweltjes, W., Paillert, M., Petie, R., Petropoulou, A., Plantenga, F., Rijgersberg, H., Top, J., Tsafaras, I., Ummels, M., van Breukelen, A. & 1 others, Weesepoel, Y., Jan 2020, Wageningen: Wageningen Food & Biobased Research. 60 p. (Wageningen Food & Biobased Research report; no. 2017)

Research output: Book/ReportReportProfessional

Open Access

Machine learning to further improve the decision which boar ejaculates to process into artificial insemination doses

Kamphuis, C., Duenk, P., Veerkamp, R. F., Visser, B., Singh, G., Nigsch, A., De Mol, R. M. & Broekhuijse, M. L. W. J., Mar 2020, In : Theriogenology. 144, p. 112-121 10 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Predicting Nitrogen Excretion of Dairy Cattle with Machine Learning

Mollenhorst, H., Bouzembrak, Y., de Haan, M., Marvin, H. J. P., Veerkamp, R. F. & Kamphuis, C., 5 Feb 2020, International Symposium on Environmental Software Systems (ISESS 2020): Environmental Software Systems. Data Science in Action. Wageningen: Springer, p. 132-138 (IFIP Advances in Information and Communication Technology ; vol. 554).

Research output: Chapter in Book/Report/Conference proceedingConference paper

Predicting survival in dairy cattle by combining genomic breeding values and phenotypic information

van der Heide, E. M. M., Veerkamp, R. F., van Pelt, M. L., Kamphuis, C. & Ducro, B. J., Jan 2020, In : Journal of Dairy Science. 103, 1, p. 556-571

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Prediction of nutrient digestibility in grower-finisher pigs based on faecal microbiota composition

Verschuren, L. M. G., Schokker, D., Bergsma, R., Jansman, A. J. M., Molist, F. & Calus, M. P. L., Jan 2020, In : Journal of Animal Breeding and Genetics. 137, 1, p. 23-35

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Real-Time Visualization of Methane Emission at Commercial Dairy Farms

Schokker, D., Mollenhorst, H., Seigers, G., De Haas, Y., Veerkamp, R. F. & Kamphuis, C., 29 Jan 2020, International Symposium on Environmental Software Systems (ISESS 2020): Environmental Software Systems. Data Science in Action. Wageningen: Springer, p. 194-200 (IFIP Advances in Information and Communication Technology ; vol. 554).

Research output: Chapter in Book/Report/Conference proceedingConference paper

Swimming exercise enhances brain plasticity in fish

Mes, D., Palstra, A. P., Henkel, C. V., Mayer, I. & Vindas, M. A., 15 Jan 2020, In : Royal Society Open Science. 7, 1, 191640.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

The economic value of R0 for selective breeding against microparasitic diseases

Janssen, K. & Bijma, P., 31 Jan 2020, In : Genetics, selection, evolution : GSE. 52, 1, 1 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Open Access
2019

228 ASAS-EAAP Exchange Speaker Talk: Big data and the development of resilience indicators for animal breeding

Mulder, H. A., Berghof, T. V. L. & Poppe, H. W. M., 5 Dec 2019, In : Journal of Animal Science. 97, Supplement 3, p. 56-56

Research output: Contribution to journalAbstractAcademic

Open Access

3R Kenya (Robust, Reliable and Resilient) - From aid to trade project: Annual report 2018

Koge, J., Kilelu, C., Coninx, I., van Vugt, S. M., van der Lee, J., Koomen, I., Soma, K., Obwanga, B., Gema, J. & Omedo Bebe, B., 2019, Wageningen Centre for Development Innovation. (WCDI-19-057)

Research output: Book/ReportReportProfessional

Accelerometry of seabream in a seacage: effects of flow conditioning on activity patterns, growth and robustness

Palstra, A. P., Arechavala-Lopez, P. & Roque, A., 8 Oct 2019.

Research output: Contribution to conferenceAbstractAcademic

Open Access

A diagonal preconditioner for solving single-step SNPBLUP efficiently

Vandenplas, J., Calus, M. P. L., Eding, H. & Vuik, C., 2019, (Submitted) Book of Abstracts of the 70th Annual Meeting of the European Federation of Animal Science. Wageningen: Wageningen Academic, Vol. 25. p. 595-595 (Book of Abstracts).

Research output: Chapter in Book/Report/Conference proceedingAbstract

Advances in dairy cattle breeding to improve longevity

Veerkamp, R. & van Pelt, M., 24 Dec 2019, Advances in breeding of dairy cattle. van der Werf, J. & Pryce, J. (eds.). Burleigh Dodds Science Publishing Limited, p. 337-354

Research output: Chapter in Book/Report/Conference proceedingChapter

A fast method to fit the mean of unselected base animals in single-step SNP-BLUP

Tribout, T., Boichard, D., Ducrocq, V. & Vandenplas, J., 2019, Book of Abstracts of the 70th Annual Meeting of the European Federation of Animal Science. Wageningen: Wageningen Academic, Vol. 25. p. 211-211 1 p. (Book of Abstracts).

Research output: Chapter in Book/Report/Conference proceedingAbstract

A Food System Approach to Evaluate the Use of Seaweeds for Ecological Intensification of Aquaculture

van den Burg, S. W. K., Hamon, K. G., Bernard, M., Janssen, K. P. E. & Debrot, A. O., Oct 2019, Ecological intensification: A new paragon for sustainable aquaculture: International Conference, 28-30 October 2019 Bogor – Indonesia, Book of abstracts. IPB Press, p. 50-51

Research output: Chapter in Book/Report/Conference proceedingAbstract

Open Access

A mechanistic model for studying the initiation of anguillid vitellogenesis by comparing the European eel (Anguilla anguilla) and the shortfinned eel (A. australis)

Jéhannet, P., Kruijt, L., Damsteegt, E. L., Swinkels, W., Heinsbroek, L. T. N., Lokman, P. M. & Palstra, A. P., 20 Feb 2019, In : General and Comparative Endocrinology. 279, p. 129-138

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
3 Citations (Scopus)

Animal breeding as a mitigation tool for enteric methane emissions of dairy cattle

de Haas, Y., de Jong, G. (ed.), van der Linde, R. (ed.) & Koenen, E. (ed.), 25 Aug 2019, p. 638.

Research output: Contribution to conferenceAbstractAcademic

A second-level diagonal preconditioner for single-step SNPBLUP

Vandenplas, J., Calus, M. P. L., Eding, H. & Vuik, C., 25 Jun 2019, In : Genetics Selection Evolution. 51, 30.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Assessing individual activity levels in two broiler lines using an ultra-wideband tracking system

Van Der Sluis, M., De Klerk, B., Ellen, E. D., De Haas, Y., Hijink, T. & Rodenburg, T. B., Aug 2019, Precision Livestock Farming 2019: Papers Presented at the 9th European Conference on Precision Livestock Farming, ECPLF 2019. O'Brien, B., Hennessy, D. & Shalloo, L. (eds.). Teagasc, p. 903-906 4 p. (Precision Livestock Farming 2019 - Papers Presented at the 9th European Conference on Precision Livestock Farming, ECPLF 2019).

Research output: Chapter in Book/Report/Conference proceedingConference paper

Assessment of sire contribution and breed-of-origin of alleles in a three-way crossbred broiler dataset

Calus, M. P. L., Vandenplas, J., Hulsegge, I., Borg, R., Henshall, J. M. & Hawken, R., 1 Dec 2019, In : Poultry Science. 98, 12, p. 6270-6280 11 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Assessment of the quality based milk payment system pilot supported by TIDE in Mbarara milkshed, Uganda

Daburon, A. & Ndambi, A., 2019, Wageningen: Wageningen Centre for Development Innovation Wageningen University & Research. 25 p. (Report / Wageningen Centre for Development Innovation; no. WCDI-19-069)

Research output: Book/ReportReportProfessional

Open Access

At-market sensor technologies to develop proxies for resilience and efficiency in dairy cows

Ouweltjes, W., De Haas, Y. & Kamphuis, C., Aug 2019, Precision Livestock Farming 2019: Papers Presented at the 9th European Conference on Precision Livestock Farming, ECPLF 2019. O'Brien, B., Hennessy, D. & Shalloo, L. (eds.). Teagasc, p. 246-253 8 p. (Precision Livestock Farming 2019 - Papers Presented at the 9th European Conference on Precision Livestock Farming, ECPLF 2019).

Research output: Chapter in Book/Report/Conference proceedingConference paper

At-market sensor technologies to develop proxies for resilience and efficiency in dairy cows

Kamphuis, C., de Haas, Y. & Ouweltjes, W., 18 Jun 2019, Proceedings of the 2nd International Precision Dairy Farming Conference. University of Minnesota, p. 11-12

Research output: Chapter in Book/Report/Conference proceedingConference paper

Open Access

Author Correction: Rapid de novo assembly of the European eel genome from nanopore sequencing reads: Rapid de novo assembly of the European eel genome from nanopore sequencing reads (Scientific Reports, (2017), 7, 1, (7213), 10.1038/s41598-017-07650-6)

Jansen, H. J., Liem, M., Jong-Raadsen, S. A., Dufour, S., Weltzien, F. A., Swinkels, W., Koelewijn, A., Palstra, A. P., Pelster, B., Spaink, H. P., van den Thillart, G. E., Dirks, R. P. & Henkel, C. V., 22 May 2019, In : Scientific Reports. 9, 7911.

Research output: Contribution to journalComment/Letter to the editorAcademic

Open Access

Automated tracking of individual activity of broiler chickens

van der Sluis, M., de Klerk, B., Rodenburg, T. B., de Haas, Y., Hijink, T. & Ellen, E. D., 2019, Proceedings of the 53rd Congress of the International Society for Applied Ethology (ISAE): Animal Lives Worth Living. Newberry, R. C. & Braastad, B. O. (eds.). Wageningen, The Netherlands: Wageningen Academic Publishers, p. 288-288

Research output: Chapter in Book/Report/Conference proceedingAbstract

Open Access

Big Data analytics in the animal production domain

Kamphuis, C., Mollenhorst, H. & Veerkamp, R. F., Jun 2019.

Research output: Contribution to conferenceAbstractAcademic

Open Access

Big data in livestock offers great potential to study heritable variation in environmental variance: a case study in dairy cattle

Mulder, H. A., Poppe, H. W. M. & Berghof, T. V. L., 10 Feb 2019.

Research output: Contribution to conferencePosterAcademic

Boosted trees to predict pneumonia, growth, and meat percentage of growing-finishing pigs

Mollenhorst, H., Ducro, B. J., de Greef, K. H., Hulsegge, I. & Kamphuis, C., 3 Oct 2019, In : Journal of Animal Science. 97, 10, p. 4152-4159

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)

Borgen van maatregelen om ammoniakemissie te reduceren

Migchels, G., Joosten, L., van Leeuwen, M., Ferwerda, R. & Wim Houwers, W., Aug 2019, Wageningen: Wageningen Livestock Research. 42 p. (Rapport / Wageningen Livestock Research; no. 1196)

Research output: Book/ReportReportProfessional

Open Access

Breeding for improved feed efficiency and reduced enteric methane of dairy cattle

de Haas, Y. & Veerkamp, R. F. (ed.), 17 Jun 2019.

Research output: Contribution to conferenceAbstractAcademic

Can breeders solve mortality due to feather pecking in laying hens?

Ellen, E. D. & Bijma, P., 1 Sep 2019, In : Poultry Science. 98, 9, p. 3431-3442 12 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Cardiac and Skeletal Muscle Transcriptome Response to Heat Stress in Kenyan Chicken Ecotypes Adapted to Low and High Altitudes Reveal Differences in Thermal Tolerance and Stress Response

Srikanth, K., Kumar, H., Park, W., Byun, M., Lim, D., Kemp, S., te Pas, M. F. W., Kim, J. M. & Park, J. E., 11 Oct 2019, In : Frontiers in Genetics. 10, 993.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)

Characterization of genetic diversity conserved in the gene bank for dutch cattle breeds

van Breukelen, A. E., Doekes, H. P., Windig, J. J. & Oldenbroek, K., 28 Nov 2019, In : Diversity. 11, 12, p. 1-13 13 p., 229.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Common genomic regions underlie height in humans and stature in cattle

Raymond, B., Yengo, L. (ed.), Costillo, R. (ed.), Schrooten, C. (ed.), Bouwman, A. C. (ed.), Veerkamp, R. F. (ed.), Hayes, B. (ed.) & Visscher, P. M. (ed.), 26 Aug 2019, Book of Abstracts of the 70th Annual Meeting of the European Federation of Animal Science. Ghent, Belgium: Wageningen Academic Publishers, p. 211-211 1 p. (EAAP Annual Meeting; vol. 1, no. 25).

Research output: Chapter in Book/Report/Conference proceedingAbstract