Research Output 1976 2020

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2020

Breeding top genotypes and accelerating response to recurrent selection by selecting parents with greater gametic variance

Bijma, P., Wientjes, Y. C. J. & Calus, M. P. L., 1 Jan 2020, In : Genetics. 214, 1, p. 91-107 17 p.

Research output: Contribution to journalArticleAcademicpeer-review

Human Herpesvirus 4
Breeding
Genotype
Germ Cells
Population

Chronic simultaneous exposure of common carp (Cyprinus carpio) from embryonic to juvenile stage to drospirenone and gestodene at low ng/L level caused intersex

Šauer, P., Tumová, J., Steinbach, C., Golovko, O., Komen, H., Maillot-Maréchal, E., Máchová, J., Grabic, R., Aït-Aïssa, S. & Kocour Kroupová, H., 30 Jan 2020, In : Ecotoxicology and Environmental Safety. 188, 109912.

Research output: Contribution to journalArticleAcademicpeer-review

Carps
Progesterone Congeners
Sex Differentiation
Histology
Bioassay

Effect of divergent selection for intramuscular fat content on muscle lipid metabolism in chickens

Liu, L., Cui, H., Xing, S., Zhao, G. & Wen, J., 1 Jan 2020, In : Animals. 10, 1, 4.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
intramuscular fat
Lipid Metabolism
lipid metabolism
Chickens
Fats

Machine learning to further improve the decision which boar ejaculates to process into artificial insemination doses

Kamphuis, C., Duenk, P., Veerkamp, R. F., Visser, B., Singh, G., Nigsch, A., De Mol, R. M. & Broekhuijse, M. L. W. J., Mar 2020, In : Theriogenology. 144, p. 112-121 10 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Artificial Insemination
artificial intelligence
boars
artificial insemination
Semen Analysis

Olfactory and gustatory functioning and food preferences of patients with Alzheimer’s disease and mild cognitive impairment compared to controls: the NUDAD project

Doorduijn, A. S., de van der Schueren, M. A. E., van de Rest, O., de Leeuw, F. A., Fieldhouse, J. L. P., Kester, M. I., Teunissen, C. E., Scheltens, P., van der Flier, W. M., Visser, M. & Boesveldt, S., Jan 2020, In : Journal of Neurology. 267, 1, p. 144-152

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Food Preferences
Alzheimer Disease
Biomarkers
Aptitude
Odorants

Predicting survival in dairy cattle by combining genomic breeding values and phenotypic information

van der Heide, E. M. M., Veerkamp, R. F., van Pelt, M. L., Kamphuis, C. & Ducro, B. J., Jan 2020, In : Journal of Dairy Science. 103, 1, p. 556-571

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
breeding value
dairy cattle
Breeding
heifers
genomics

Prediction of nutrient digestibility in grower-finisher pigs based on faecal microbiota composition

Verschuren, L. M. G., Schokker, D., Bergsma, R., Jansman, A. J. M., Molist, F. & Calus, M. P. L., Jan 2020, In : Journal of Animal Breeding and Genetics. 137, 1, p. 23-35

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
feeder pigs
Microbiota
Swine
digestibility
Food
2019
1 Citation (Scopus)

A genome-wide association study for susceptibility and infectivity of Holstein Friesian dairy cattle to digital dermatitis

Biemans, F., de Jong, M. C. M. & Bijma, P., Jul 2019, In : Journal of Dairy Science. 102, 7, p. 6248-6262

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Digital Dermatitis
Genome-Wide Association Study
dermatitis
dairy cattle
Single Nucleotide Polymorphism
3 Citations (Scopus)

Alternation of nest visits varies with experimentally manipulated workload in brood-provisioning great tits

Baldan, D., Curk, T., Hinde, C. A. & Lessells, C. M., Oct 2019, In : Animal Behaviour. 156, p. 139-146

Research output: Contribution to journalArticleAcademicpeer-review

nest
nests
brood size
Parus major
parental care
1 Citation (Scopus)

A mechanistic model for studying the initiation of anguillid vitellogenesis by comparing the European eel (Anguilla anguilla) and the shortfinned eel (A. australis)

Jéhannet, P., Kruijt, L., Damsteegt, E. L., Swinkels, W., Heinsbroek, L. T. N., Lokman, P. M. & Palstra, A. P., 20 Feb 2019, In : General and Comparative Endocrinology. 279, p. 129-138

Research output: Contribution to journalArticleAcademicpeer-review

Anguilla
Vitellogenesis
Eels
Anguilla anguilla
mechanistic models
2 Citations (Scopus)

Ancient pigs reveal a near-complete genomic turnover following their introduction to Europe

Frantz, L. A. F., Haile, J., Lin, A. T., Scheu, A., Geörg, C., Benecke, N., Alexander, M., Linderholm, A., Mullin, V. E., Daly, K. G., Battista, V. M., Price, M., Gron, K. J., Alexandri, P., Arbogast, R. M., Arbuckle, B., Bǎlǎşescu, A., Barnett, R., Bartosiewicz, L., Baryshnikov, G. & 80 others, Bonsall, C., Borić, D., Boroneanţ, A., Bulatović, J., Çakirlar, C., Carretero, J. M., Chapman, J., Church, M., Crooijmans, R., De Cupere, B., Detry, C., Dimitrijevic, V., Dumitraşcu, V., Du Plessis, L., Edwards, C. J., Erek, C. M., Erim-Özdoǧan, A., Ervynck, A., Fulgione, D., Gligor, M., Götherström, A., Gourichon, L., Groenen, M. A. M., Helmer, D., Hongo, H., Horwitz, L. K., Irving-Pease, E. K., Lebrasseur, O., Lesur, J., Malone, C., Manaseryan, N., Marciniak, A., Martlew, H., Mashkour, M., Matthews, R., Matuzeviciute, G. M., Maziar, S., Meijaard, E., McGovern, T., Megens, H. J., Miller, R., Mohaseb, A. F., Orschiedt, J., Orton, D., Papathanasiou, A., Pearson, M. P., Pinhasi, R., Radmanović, D., Ricaut, F. X., Richards, M., Sabin, R., Sarti, L., Schier, W., Sheikhi, S., Stephan, E., Stewart, J. R., Stoddart, S., Tagliacozzo, A., Tasić, N., Trantalidou, K., Tresset, A., Valdiosera, C., Van Den Hurk, Y., Van Poucke, S., Vigne, J. D., Yanevich, A., Zeeb-Lanz, A., Triantafyllidis, A., Gilbert, M. T. P., Schibler, J., Rowley-Conwy, P., Zeder, M., Peters, J., Cucchi, T., Bradley, D. G., Dobney, K., Burger, J., Evin, A., Girdland-Flink, L. & Larson, G., 27 Aug 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 35, p. 17231-17238 8 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Sus scrofa
Swine
Middle East
Mitochondrial DNA
Gene Flow
2 Citations (Scopus)

A new chicken 55K SNP genotyping array

Liu, R., Xing, S., Wang, J., Zheng, M., Cui, H., Crooijmans, R. P. M. A., Li, Q., Zhao, G. & Wen, J., 22 May 2019, In : BMC Genomics. 20, 1, 1 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Single Nucleotide Polymorphism
Chickens
Breeding
Genome-Wide Association Study
Meat

A note on genetic parameters and accuracy of estimated breeding values in honey bees

Brascamp, E. W. & Bijma, P., 27 Nov 2019, In : Genetics Selection Evolution. 51, 1, 71.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Honey
Bees
honey
breeding value
queen insects

A QTL for number of teats shows breed specific effects on number of vertebrae in pigs: Bridging the gap between molecular and quantitative genetics

Van Son, M., Lopes, M. S., Martell, H. J., Derks, M. F. L., Gangsei, L. E., Kongsro, J., Wass, M. N., Grindflek, E. H. & Harlizius, B., 26 Mar 2019, In : Frontiers in Genetics. 10, MAR, 00272.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Ribs
Molecular Biology
Spine
Swine
Haplotypes

A second-level diagonal preconditioner for single-step SNPBLUP

Vandenplas, J., Calus, M. P. L., Eding, H. & Vuik, C., 25 Jun 2019, In : Genetics Selection Evolution. 51, 30.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
single nucleotide polymorphism
Single Nucleotide Polymorphism
polymorphism
eigenvalue
methodology

Assessment of sire contribution and breed-of-origin of alleles in a three-way crossbred broiler dataset

Calus, M. P. L., Vandenplas, J., Hulsegge, I., Borg, R., Henshall, J. M. & Hawken, R., 1 Dec 2019, In : Poultry Science. 98, 12, p. 6270-6280 11 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
sires
purebreds
crossbreds
broiler chickens
alleles
2 Citations (Scopus)

Associations of AD biomarkers and cognitive performance with nutritional status: The NUDAD project

Doorduijn, A. S., Visser, M., van de Rest, O., Kester, M. I., de Leeuw, F. A., Boesveldt, S., Fieldhouse, J. L. P., van den Heuvel, E. G. H. M., Teunissen, C. E., Scheltens, P., van der Flier, W. M. & de van der Schueren, M. A. E., 23 May 2019, In : Nutrients. 11, 5, 1161.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Alzheimer disease
Nutritional Status
cognition
nutritional status
biomarkers
Open Access
Oreochromis niloticus
literature review
dissolved oxygen
feed conversion
crude protein
1 Citation (Scopus)

Body weight deviations as indicator for resilience in layer chickens

Berghof, T. V. L., Bovenhuis, H. & Mulder, H. A., 13 Dec 2019, In : Frontiers in Genetics. 10, 1216.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Chickens
Body Weight
Antibodies
Disease Resistance
Immunity
1 Citation (Scopus)

Boosted trees to predict pneumonia, growth, and meat percentage of growing-finishing pigs1

Mollenhorst, H., Ducro, B. J., de Greef, K. H., Hulsegge, I. & Kamphuis, C., 3 Oct 2019, In : Journal of Animal Science. 97, 10, p. 4152-4159

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Meat
pneumonia
finishing
Pneumonia
Swine

Can breeders solve mortality due to feather pecking in laying hens?

Ellen, E. D. & Bijma, P., 1 Sep 2019, In : Poultry Science. 98, 9, p. 3431-3442 12 p.

Research output: Contribution to journalArticleAcademicpeer-review

feather pecking
laying hens
marker-assisted selection
breeding
poultry industry

Combined use of milk infrared spectra and genotypes can improve prediction of milk fat composition

Wang, Q. & Bovenhuis, H., 25 Dec 2019, In : Journal of Dairy Science.

Research output: Contribution to journalArticleAcademicpeer-review

milk fat
Milk
Fats
Genotype
milk

Combining multi-population datasets for joint genome-wide association and meta-analyses: The case of bovine milk fat composition traits

Gebreyesus, G., Buitenhuis, A. J., Poulsen, N. A., Visker, M. H. P. W., Zhang, Q., van Valenberg, H. J. F., Sun, D. & Bovenhuis, H., Dec 2019, In : Journal of Dairy Science. 102, 12, p. 11124-11141

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Genome-Wide Association Study
milk fat
Meta-Analysis
Milk
Fats
2 Citations (Scopus)
Open Access
Lactation
Holstein
lactation
prediction
cattle

Comparison of methods to measure methane for use in genetic evaluation of dairy cattle

Garnsworthy, P. C., Difford, G. F., Bell, M. J., Bayat, A. R., Huhtanen, P., Kuhla, B., Lassen, J., Peiren, N., Pszczola, M., Sorg, D., Visker, M. H. P. W. & Yan, T., 1 Oct 2019, In : Animals. 9, 10, 837.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Methane
methane
dairy cattle
methodology
sulfur hexafluoride

Deciphering the patterns of genetic admixture and diversity in southern European cattle using genome-wide SNPs

Upadhyay, M., Bortoluzzi, C., Barbato, M., Ajmone-Marsan, P., Colli, L., Ginja, C., Sonstegard, T. S., Bosse, M., Lenstra, J. A., Groenen, M. A. M. & Crooijmans, R. P. M. A., Jun 2019, In : Evolutionary Applications. 12, 5, p. 951-963

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Single Nucleotide Polymorphism
cattle
genome
Genome
ancestry
7 Citations (Scopus)

Deleterious alleles in the context of domestication, inbreeding, and selection

Bosse, M., Megens, H-J., Derks, M. F. L., de Cara, Á. M. R. & Groenen, M. A. M., 2019, In : Evolutionary Applications. 12, 1, p. 6-17

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Inbreeding
domestication
inbreeding
allele
domestic species

Detection of a Frameshift Deletion in the SPTBN4 Gene Leads to Prevention of Severe Myopathy and Postnatal Mortality in Pigs

Derks, M. F. L., Harlizius, B., Lopez, M. S., Greijdanus-van der Putten, S., Dibbits, B. W., Laport, K., Megens, H. J. W. C. & Groenen, M., 26 Nov 2019, In : Frontiers in Genetics Livestock Genomics. 10, 9 p., 1226.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Spectrin
Muscular Diseases
Breeding
Swine
Mortality

Deterministic simulations to determine the impacts of economic and non-economic breeding objectives on sustainable intensification of developing smallholder dairy farms

Kariuki, C. M., van Arendonk, J. A. M., Kahi, A. K. & Komen, H., 1 Aug 2019, In : Livestock Science. 226, p. 7-12 6 p.

Research output: Contribution to journalArticleAcademicpeer-review

economic impact
dairy farming
Breeding
Economics
Milk

Does paternal immunocompetence affect offspring vulnerability to maternal androgens? A study in domestic chickens

Lelono, A., Robledo-Ruiz, D. A., Berghof, T. V. L., Parmentier, H. K., Riedstra, B. & Groothuis, T. G., 20 Nov 2019, In : Biology Open. 8, 11, 8.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Immunocompetence
immunocompetence
androgens
Fathers
Sesame Oil

Economic optimization of full-sib test group size and genotyping effort in a breeding program for Atlantic salmon

Janssen, K., Saatkamp, H. W., Calus, M. P. L. & Komen, H., 3 Sep 2019, In : Genetics Selection Evolution. 51, 1, 49.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Salmo salar
Budgets
group size
genotyping
Breeding
1 Citation (Scopus)

Efficient and accurate computation of base generation allele frequencies

Aldridge, M. N., Vandenplas, J. & Calus, M. P. L., Feb 2019, In : Journal of Dairy Science. 102, 2, p. 1364-1373

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Gene Frequency
gene frequency
least squares
Least-Squares Analysis
methodology
2 Citations (Scopus)

Estimating the purebred-crossbred genetic correlation of body weight in broiler chickens with pedigree or genomic relationships

Duenk, P., Calus, M. P. L., Wientjes, Y. C. J., Breen, V. P., Henshall, J. M., Hawken, R. & Bijma, P., 19 Feb 2019, In : Genetics Selection Evolution. 51, 1, 447.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Pedigree
purebreds
pedigree
genetic correlation
Chickens

Estimation of Muscle Scores of Live Pigs Using a Kinect Camera

Alsahaf, A., Azzopardi, G., Ducro, B., Hanenberg, E., Veerkamp, R. F. & Petkov, N., 24 Apr 2019, In : IEEE Access. 7, p. 52238-52245 8 p., 8698234.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Muscle
Cameras
Farms
Animals
Classifiers
1 Citation (Scopus)
lactation curve
autocorrelation
Lactation
Breeding
Fertility
2 Citations (Scopus)

Exploring the unmapped DNA and RNA reads in a songbird genome

Laine, V. N., Gossmann, T. I., van Oers, K., Visser, M. E. & Groenen, M. A. M., 8 Jan 2019, In : BMC Genomics. 20, 1, 19.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Songbirds
Genome
RNA
DNA
Trypanosoma
3 Citations (Scopus)

Follicular development of sows at weaning in relation to estimated breeding value for within-litter variation in piglet birth weight

Costermans, N. G. J., Teerds, K. J., Keijer, J., Knol, E. F., Koopmanschap, R. E., Kemp, B. & Soede, N. M., Mar 2019, In : Animal. 13, 3, p. 554-563

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
follicular development
breeding value
litters (young animals)
birth weight
sows
1 Citation (Scopus)

Genetic analysis of udder conformation traits derived from automatic milking system recording in dairy cows

Poppe, M., Mulder, H. A., Ducro, B. J. & de Jong, G., Feb 2019, In : Journal of Dairy Science. 102, 2, p. 1386-1396

Research output: Contribution to journalArticleAcademicpeer-review

Animal Mammary Glands
udders
milking
genetic techniques and protocols
dairy cows

Genetic analysis on body weight at different ages in broiler chicken raised in commercial environment

Chu, T. T., Madsen, P., Norberg, E., Wang, L., Marois, D., Henshall, J. & Jensen, J., 17 Oct 2019, In : Journal of Animal Breeding and Genetics.

Research output: Contribution to journalArticleAcademicpeer-review

genetic techniques and protocols
Chickens
broiler chickens
Body Weight
body weight

Genetic correlations between growth performance and carcass traits of purebred and crossbred pigs raised in tropical and temperate climates1

Godinho, R. M., Bergsma, R., Silva, F. F., Sevillano, C. A., Knol, E. F., Komen, H., Guimarães, S. E. F., Lopes, M. S. & Bastiaansen, J. W. M., 3 Sep 2019, In : Journal of Animal Science. 97, 9, p. 3648-3657 10 p.

Research output: Contribution to journalArticleAcademicpeer-review

purebreds
Climate
carcass characteristics
genetic correlation
growth performance

Genetic diversity of Nile tilapia (Oreochromis niloticus) throughout West Africa

Lind, C. E., Agyakwah, S. K., Attipoe, F. Y., Nugent, C., Crooijmans, R. P. M. A. & Toguyeni, A., 14 Nov 2019, In : Scientific Reports. 9, 1, 16767.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Oreochromis niloticus
Western Africa
genetic variation
Tilapia (Cichlidae)
genetic resources
Open Access
Digital Dermatitis
Basic Reproduction Number
infectivity
dermatitis
breeding value

Genetic parameters for body weight and different definitions of residual feed intake in broiler chickens

Mebratie, W., Madsen, P., Hawken, R., Romé, H., Marois, D., Henshall, J., Bovenhuis, H. & Jensen, J., 23 Sep 2019, In : Genetics Selection Evolution. 51, 1, 53.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Chickens
feed intake
broiler chickens
Body Weight
Bayes Theorem
1 Citation (Scopus)

Genetics and genomics of uniformity and resilience in livestock and aquaculture species: A review

de Souza Lung, L. H., Carvalheiro, R., de Rezende Neves, H. H. & Mulder, H. A., 11 Nov 2019, In : Journal of Animal Breeding and Genetics.

Research output: Contribution to journalArticleAcademicpeer-review

Aquaculture
Livestock
Genomics
aquaculture
livestock
1 Citation (Scopus)

Genome-wide association studies for genetic effects that change during lactation in dairy cattle

Lu, H. & Bovenhuis, H., Aug 2019, In : Journal of Dairy Science. 102, 8, p. 7263-7276

Research output: Contribution to journalArticleAcademicpeer-review

Genome-Wide Association Study
Lactation
dairy cattle
lactation
lactation stage

Genome-wide association study for insect bite hypersensitivity susceptibility in horses revealed novel associated loci on chromosome 1

Shrestha, M., Solé, M., Ducro, B. J., Sundquist, M., Thomas, R., Schurink, A., Eriksson, S. & Lindgren, G., 5 Sep 2019, In : Journal of Animal Breeding and Genetics.

Research output: Contribution to journalArticleAcademicpeer-review

Insect Bites and Stings
Chromosomes, Human, Pair 1
Genome-Wide Association Study
hypersensitivity
Horses
1 Citation (Scopus)

Genome-wide association study for αS1- and αS2-casein phosphorylation in Dutch Holstein Friesian

Fang, Z. H., Bovenhuis, H., van Valenberg, H. J. F., Martin, P., Duchemin, S. I., Huppertz, T. & Visker, M. H. P. W., Feb 2019, In : Journal of Dairy Science. 102, 2, p. 1374-1385

Research output: Contribution to journalArticleAcademicpeer-review

Genome-Wide Association Study
Caseins
casein
phosphorylation
Holstein
Genome-Wide Association Study
Milk
Holstein
milk
loci
1 Citation (Scopus)

Genome wide association study of body weight and feed efficiency traits in a commercial broiler chicken population, a re-visitation

Mebratie, W., Reyer, H., Wimmers, K., Bovenhuis, H. & Jensen, J., 29 Jan 2019, In : Scientific Reports. 9, 1, 922.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Genome-Wide Association Study
Single Nucleotide Polymorphism
Chickens
Body Weight
Quantitative Trait Loci
1 Citation (Scopus)

Genomic analysis on pygmy hog reveals extensive interbreeding during wild boar expansion

Liu, L., Bosse, M., Megens, H-J., Frantz, L. A. F., Lee, Y. L., Irving-Pease, E. K., Narayan, G., Groenen, M. A. M. & Madsen, O., 1 Dec 2019, In : Nature Communications. 10, 1992.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Sus scrofa
genome
admixtures
Genes
expansion