Research Output 1976 2020

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Conference paper
2019

Defining resilient pigs after a Porcine Reproductive and Respiratory Syndrome Virus (PRRSV) challenge using activity and feeding data from accelerometers

Van Der Zande, L. E., Dunkelberger, J. R., Rodenburg, B., Mathur, P. K., Cairns, W. J., Keyes, M. C., Eggert, J. M., Little, E. A., Dee, S. A. & Knol, E. F., Aug 2019, Precision Livestock Farming 2019: Papers Presented at the 9th European Conference on Precision Livestock Farming, ECPLF 2019. O'Brien, B., Hennessy, D. & Shalloo, L. (eds.). Teagasc, p. 471-475 5 p. (Precision Livestock Farming 2019 - Papers Presented at the 9th European Conference on Precision Livestock Farming, ECPLF 2019).

Research output: Chapter in Book/Report/Conference proceedingConference paper

Porcine reproductive and respiratory syndrome virus
porcine reproductive and respiratory syndrome
swine
infection
ear tags

Enhancing the functioning of farm animal gene banks in Europe: results of the IMAGE project

Hiemstra, S. J., Boettcher, P., Crooijmans, R. P. M. A., Danchin-Burge, C., Leroy, G., Moran, D., Kugle, W., Woelders, H. & Tixier-Boichard, M., Oct 2019, Proceedings of ESPG conference 23-25 October Prague Czech Republic. Trevil, P. & Weigend, S. (eds.). Prague, p. 25-28

Research output: Chapter in Book/Report/Conference proceedingConference paper

Open Access
2018

Accuracy of genomic estimated breeding values for crossbred performance in broilers using a purebred or crossbred reference population

Duenk, P., Calus, M. P. L., Wientjes, Y. C. J., Breen, V., Henshall, J., Hawken, R. & Bijma, P., 11 Feb 2018, Proceedings of the 11th World Congress on Genetics Applied to Livestock Production: Volume Methods and Tools - Prediction 3. WCGALP, 5 p. 220

Research output: Chapter in Book/Report/Conference proceedingConference paper

Open Access
purebreds
breeding value
crossbreds
broiler chickens
genomics

Assigning pigs to uniform target weight groups using machine learning

Alsahaf, A., Azzopardi, G., Ducro, B. J., Veerkamp, R. F. & Petkov, N., 11 Feb 2018, World Congress on Genetics Applied to Livestock Production. 1 ed. Vol. Species - Porcine. p. 112-112

Research output: Chapter in Book/Report/Conference proceedingConference paper

Open Access

A survey of deleterious variation in highly managed pig populations

Derks, M. F. L., Megens, H. J. W. C., Bosse, M., Lopes, M. S., Harlizius, B. & Groenen, M., 24 Feb 2018, Proceedings of the 11th World Congress on Genetics Applied to Livestock Production. 7 p. 11.522

Research output: Chapter in Book/Report/Conference proceedingConference paper

Open Access
swine
genome
mutation
lethal genes
inbreeding depression

Automatic milking system, a source for novel phenotypes as base for new genetic selection tools

Vosman, J. J., Poppe, H. W. M., Mulder, H. A., Assen, A., Ducro, B. J., Gerrits, A., Vesseur, C., Boes, J. H., Eding, H. & de Jong, G., Feb 2018, Proceedings of the World Congress on Genetics Applied to Livestock Production: Volume Technologies - Novel Phenotypes. WCGALP, 8 p. 286

Research output: Chapter in Book/Report/Conference proceedingConference paper

Open Access
milking
phenotype
breeding value
udders
milk

Breed-specific genome-wide association study for purebred and crossbred performance

Sevillano Del Aguila, C. A., Guimaraes, S. E. F., Silva, F. & Calus, M. P. L., 17 Feb 2018, Proceedings 11th World Congress of Genetics Applied to Livestock Production. 6 p. 11.332

Research output: Chapter in Book/Report/Conference proceedingConference paper

Open Access
purebreds
crossbreds
breeds
fat thickness
backfat

Candidate gene for natural immune competence in chickens revealed through genome wide association study

Visker, M. H. P. W., Berghof, T. V. L., Arts, J. A. J., Parmentier, H. K., van der Poel, J. J., Vereijken, A. & Bovenhuis, H., Feb 2018, Proceedings of the World Congress on Genetics Applied to Livestock Production: Volume Biology - Disease Resistance 3. WCGALP, 4 p. 43

Research output: Chapter in Book/Report/Conference proceedingConference paper

Open Access
immunocompetence
chickens
single nucleotide polymorphism
antibodies
genes

Derivation of parentage and breed-of-origin of alleles in a crossbred broiler dataset

Calus, M. P. L., Vandenplas, J., Hulsegge, B., Borg, R., Henshall, J. & Hawken, R., 11 Feb 2018, Proceedings of the 11th World Congress on Genetics Applied to Livestock Production: Volume Species - Avian 2. WCGALP, 6 p. 320

Research output: Chapter in Book/Report/Conference proceedingConference paper

Open Access
parentage
crossbreds
purebreds
broiler chickens
alleles

Detection of candidate regions affecting bovine IgM natural antibodies in milk

Cordero Solorzano, J., Arts, J. A. J., Parmentier, H. K. & Bovenhuis, H., Feb 2018, Proceedings of the World Congress on Genetics Applied to Livestock Production: Volume Biology - Disease Resistance 1. WCGALP, 8 p. 559

Research output: Chapter in Book/Report/Conference proceedingConference paper

Open Access
milk
antibodies
dairy cattle
cattle
immunoglobulin heavy chains

Early prediction of phenotypic survival to the second lactation in Dutch and Flemish Holstein heifers using genomic and phenotypic data

van der Heide, E. E. M., Veerkamp, R. F., Kamphuis, C. & Ducro, B. J., 11 Feb 2018, Proceedings of the 11th World Congress on Genetics Applied to Livestock Production: Volume Electronic Poster Session - Theory to Application 2. 6 p. 99

Research output: Chapter in Book/Report/Conference proceedingConference paper

Open Access
heifers
Holstein
lactation
genomics
prediction

Genetic analysis of udder conformation traits derived from AMS recording in dairy cows

Ducro, B. J., Poppe, H. W. M., Mulder, H. A. & de Jong, G., Feb 2018, Proceedings of the 11th World Congress on Genetics Applied to Livestock Production: Volume Electronic Poster Session - Biology & Species - Bovine (dairy) 2. WCGALP, 5 p. 479

Research output: Chapter in Book/Report/Conference proceedingConference paper

Open Access
udders
milking
genetic techniques and protocols
dairy cows
heritability

Genome-wide association study of the de novo synthesized milk fatty acids based on Dutch, Danish and Chinese Holstein Friesians

Gebreyesus, G., Buitenhuis, B., Poulsen, N. A., Visker, M. H. P. W., Zhang, Q., van Valenberg, H. J. F., Sun, D. & Bovenhuis, H., Feb 2018, Proceedings of the World Congress on Genetics Applied to Livestock Production: Volume Biology & Species - Bovine (dairy) 2. WCGALP, 6 p. 141

Research output: Chapter in Book/Report/Conference proceedingConference paper

Open Access
Holstein
fatty acids
quantitative trait loci
linear models
chromosomes

Genomic Breeding Value Estimation in countries without large-scale genotyping: merging two training populations to increase genomic reliabilities

Stoop, W. M., Calus, M. P. L., Schrooten, C., Gombacsi, P., Weller, J. I. & de Jong, G., 11 Feb 2018, Proceedings of the 11th World Congress on Genetics Applied to Livestock Production: Volume Electronic Poster Session - Theory to Application - 1. WCGALP, 6 p. 157

Research output: Chapter in Book/Report/Conference proceedingConference paper

Open Access
Values
kinship
Israeli
evaluation

Genomic prediction of feed intake using predictor traits

Manzanilla Pech, C. I. V., Veerkamp, R. F., de Haas, Y., Calus, M. P. L. & ten Napel, J., 11 Feb 2018, Proceedings of the 11th World Congress on Genetics Applied to Livestock Production. 4 p. 114

Research output: Chapter in Book/Report/Conference proceedingConference paper

Open Access
dry matter intake
feed intake
genomics
dairy protein
prediction

Genomic selection and inbreeding and kinship in Dutch-Flemish Holstein Friesian cattle

Doekes, H. P., Veerkamp, R. F., Bijma, P., Hiemstra, S. J., Ursinus, W. W., van der Beek, S. & Windig, J. J., 2018, Proceedings of the 11th World Congress on Genetics Applied to Livestock Production: Volume Theory to Application 2. 5 p. 11.90

Research output: Chapter in Book/Report/Conference proceedingConference paper

Open Access
kinship
marker-assisted selection
inbreeding
Holstein
cattle

GWAS for genotype by lactation stage interaction in dairy cattle.

Lu, H. & Bovenhuis, H., Feb 2018, Proceedings of the World Congress on Genetics Applied to Livestock Production. Vol. 11.469. 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference paper

Open Access
lactation stage
dairy cattle
genotype
dairy protein
lactation

Increasing genetic gain by selecting for higher Mendelian sampling variance

Bijma, P., Wientjes, Y. C. J. & Calus, M. P. L., 1 Feb 2018, Proceedings of the 11th World Congress on Genetics Applied to Livestock Production: Volume Genetic Gain - Breeding Strategies 2. WCGALP, 5 p. 47

Research output: Chapter in Book/Report/Conference proceedingConference paper

Open Access
genetic improvement
germ cells
breeding
dairy cattle
linkage (genetics)

LocalPork - breeding for local conditions

Bastiaansen, J. W. M., Guimarães, S. E. F., Ali, B. M., Sevillano, C. A., Mezencio Godinho, R., Bergsma, R., Lopes, M. S., de Mey, Y. & Calus, M. P. L., 11 Feb 2018, Proceedings of the 11th World Congress on Genetics Applied to Livestock Production: Volume Species - Porcine 1. WCGALP, 872

Research output: Chapter in Book/Report/Conference proceedingConference paper

Open Access
crossbreds
breeding
diet
genetic correlation
purebreds

Models with indirect genetic effects depeding on group sizes - A simulation study assessing the precision of the estimates of the dilution

Heidaritabar, M., Bijma, P., Janss, L. G., Bortoluzzi, C., Nielsen, H. M., Ask, B. & Christensen, O. F., Feb 2018, Proceedings of the World Congress on Genetics Applied to Livestock Production: Volume Biology - Behaviour. WCGALP, 38

Research output: Chapter in Book/Report/Conference proceedingConference paper

Open Access
group size
group effect
phenotype

Predicting milk phosphorus content based on genotypic and milk infrared data

Bovenhuis, H., Jibrila, I. & Dijkstra, J., Feb 2018, Proceedings of the World Congress on Genetics Applied to Livestock Production: Volume Electronic Poster Session - Biology - Feed Intake and Efficiency 1. WCGALP, 5 p. 534

Research output: Chapter in Book/Report/Conference proceedingConference paper

Open Access
phosphorus
milk
prediction
cows
cow feeding

Predicting slaughter weight in pigs with regression tree ensembles

Alsahaf, A., Azzopardi, G., Ducro, B., Veerkamp, R. F. & Petkov, N., Jan 2018, Applications of Intelligent Systems - Proceedings of the 1st International APPIS Conference 2018, APPIS 2018. Petkov, N., Strisciuglio, N. & Travieso-Gonzalez, C. M. (eds.). IOS Press, p. 1-9 (Frontiers in Artificial Intelligence and Applications; vol. 310).

Research output: Chapter in Book/Report/Conference proceedingConference paper

Gradient methods
Farms
Logistics

The economic value of R0 for macroparasitic diseases

Janssen, K. P. E., Saatkamp, H. W., Bijma, P., de Jong, M. C. M. & Komen, J., 16 Feb 2018, Proceedings of the World Congress on Genetics Applied to Livestock Production: Volume Genetic gain - Breeding Objectives and Economics of Selection Schemes 2. WCGALP, 8 p. 1021

Research output: Chapter in Book/Report/Conference proceedingConference paper

Open Access
economic valuation
Caligidae
breeding
salmon
epidemiology

The fate of new mutations: genomic selection exploits new mutation variance to a much smaller degree than traditional selection

Mulder, H. A., Lee, S. H., Hayes, B. J. & van der Werf, J. H. J., Feb 2018, Proceedings of the 11th World Congress on Genetics Applied to Livestock Production: Volume Genetic Gain - Breeding Strategies 1. WCGALP, 5 p. 415

Research output: Chapter in Book/Report/Conference proceedingConference paper

Open Access
marker-assisted selection
mutation
genetic variance
selection response
pedigree

The value of conserved samples in gene banks for animal breeding in the MRIJ cattle breed

Eynard, S. E., Calus, M. P. L., Hulsegge, I., Hiemstra, S. J. & Windig, J. J., 2018, Proceedings of the World Congress on Genetics Applied to Livestock Production: Volume Challenges - Species Conservation. WCGALP, 5 p. 191

Research output: Chapter in Book/Report/Conference proceedingConference paper

Open Access
gene banks
animal breeding
cattle breeds
bulls
genetic merit

Uniformity in birth weight is heritable in Norwegian White Sheep

Sae-Lim, P., Jakobsen, J. H. & Mulder, H. A., Feb 2018, Proceedings of the 11th World Congress on Genetics Applied to Livestock Production: Volume Challenges - Genotype by Environment Interactions. WCGALP, 6 p. 278

Research output: Chapter in Book/Report/Conference proceedingConference paper

Open Access
birth weight
sheep
lambs
low birth weight
sires
2014

Environmental impacts of genetic improvement in growth rate and feed conversion in fish farming under density and nitrogen limitation

Besson, M., Aubin, J., van Arendonk, J. A. M., Komen, H., Poelman, M., Quillet, E., Vandeputte, M. & de Boer, I. J. M., 2014, Proceedings of the Life Cycle Assessment Food Conference (LCA Food 2014). p. 117-124

Research output: Chapter in Book/Report/Conference proceedingConference paper

Open Access
fish culture
genetic improvement
environmental impact
feed conversion
nitrogen

Genetic diversity and measures to reduce inbreeding in Friesian Horses

Ducro, B. J., Windig, J. J., Hellinga, I. & Bovenhuis, H., 2014, Proceedings, 10th World Congress of Genetics Applied to Livestock Production. p. 797

Research output: Chapter in Book/Report/Conference proceedingConference paper

Open Access

Genetic Parameters for Endocrine Fertility Traits from In-line Milk Progesterone Records in Dairy Cows

Tenghe, A. M. M., Bouwman, A. C., Berglund, B., Strandberg, E. & Veerkamp, R. F., 2014, Proceedings, 10th World Congress of Genetics Applied to Livestock Production. p. 151

Research output: Chapter in Book/Report/Conference proceedingConference paper

Open Access
corpus luteum
progesterone
dairy cows
milk
repeatability

Genetics and genomics of fertility in dairy cows

Veerkamp, R. F., Tenghe, A. M. M., Kaal, L. M. T. E. & Bouwman, A. C., 2014, Proceedings of the Nottingham Cattle Fertility Conference 2014. p. 25-30

Research output: Chapter in Book/Report/Conference proceedingConference paper

Open Access

Genomic predictions for dry matter intake using the international reference population of gDMI

de Haas, Y., Pryce, J. E., Calus, M. P. L., Hulsegge, B., Spurlock, D. M., Berry, D. P., Wall, E., Lovendahl, P., Weigel, K., MacDonald, K., Miglior, F., Krattenmacher, N. & Veerkamp, R. F., 2014, Proceedings of the The 2014 Interbull Meeting. Vol. 48. p. 94-99

Research output: Chapter in Book/Report/Conference proceedingConference paper

Open Access
dry matter
genomics
prediction
phenotype
breeding

High Imputation Accuracy in Layer Chicken from Sequence Data on a Few Key Ancestors

Heidaritabar, M., Calus, M. P. L., Vereijken, A., Groenen, M. A. M. & Bastiaansen, J. W. M., 2014, Proceedings, 10th World Congress of Genetics Applied to Livestock Production. p. 660

Research output: Chapter in Book/Report/Conference proceedingConference paper

Open Access
ancestry
chickens
genome
gene frequency
animals

Integrate cow and bull data in genomic evaluation for conformation traits and claw health

Schopen, G. C. B., Vessies, J., Calus, M. P. L., Schrooten, C. & de Roos, A. P. W., 2014, Proceedings, 10th World Congress of Genetics Applied to Livestock Production. p. 299

Research output: Chapter in Book/Report/Conference proceedingConference paper

Open Access
claws
bulls
genomics
cows
animals

Simultaneous deregression of cow and bull breeding values

Calus, M. P. L., Schopen, G. C. B. & Veerkamp, R. F., 2014, Proceedings of the Interbull Meeting. Vol. 48. p. 63-67

Research output: Chapter in Book/Report/Conference proceedingConference paper

Open Access
breeding value
bulls
cows
genomics
prediction

SNP effects depend on genetic and environmental context

Bastiaansen, J. W. M., Bovenhuis, H., Lopes, M. S., Silva, F., Megens, H. J. W. C. & Calus, M. P. L., 2014, Proceedings of the 10th World congress on genetics applied to livestock production. p. 356

Research output: Chapter in Book/Report/Conference proceedingConference paper

Open Access
crossbreds
litter size
estrous cycle
genetic background
quantitative trait loci

The use of whole genome sequence data to estimate genetic relationships including rare alleles information

Eynard, S. E., Windig, J. J., Leroy, G., Verrier, E., Hiemstra, S. J., van Binsbergen, R. & Calus, M. P. L., 2014, Proceedings, 10th World Congress of Genetics Applied to Livestock Production. p. 47

Research output: Chapter in Book/Report/Conference proceedingConference paper

Open Access
genetic relationships
alleles
genome
livestock
pedigree
2013

Consequences of selection for indirect genetic effects on growth for production traits in pigs

Camerlink, I., Duijvesteijn, N., Bolhuis, J. E., van Arendonk, J. A. M. & Bijma, P., 2013, Book of Abstracts of the 64th Annual Meeting of the European Federation of Animal Science, 26-30 August 2013, Nantes, France. Wageningen: Wageningen Academic Publishers, Vol. 19. p. 135

Research output: Chapter in Book/Report/Conference proceedingConference paper

Economics of using genomic selection at the farm level

Calus, M. P. L., Bijma, P., van Arendonk, J. A. M. & Veerkamp, R. F., 2013, Book of Abstracts of the 64th Annual Meeting of the European Federation of Animal Science, 26-30 August 2013, Nantes, France. Wageningen Academic Publishers, Vol. 19. p. 184-184

Research output: Chapter in Book/Report/Conference proceedingConference paper

marker-assisted selection
economics
farms
dairy cattle
genomics

Efficiency of BLUP genomic prediction models that use pre-computed SNP variances

Veerkamp, R. F., Calus, M. P. L. & Schrooten, C., 2013, Book of Abstracts of the 64th Annual Meeting of the European Federation of Animal Science, Nantes, France 26-30 August 2013. Wageningen Academic Publishers, Vol. 19. p. 453-453

Research output: Chapter in Book/Report/Conference proceedingConference paper

Genetic parameters across lactation for dry matter intake and milk yield in Holstein cattle

Manzanilla Pech, C. I. V., Veerkamp, R. F., Pryce, J., Calus, M. P. L. & de Haas, Y., 2013, Book of Abstracts of the 64th Annual Meeting of the European Federation of Animal Science, Nantes, France 26-30 August 2013. Wageningen Academic Publishers, Vol. 19. p. 624-624

Research output: Chapter in Book/Report/Conference proceedingConference paper

Genotype imputation accuracy in Holstein Friesian cattle in case of whole-genome sequence data

van Binsbergen, R., Bink, M. C. A. M., Calus, M. P. L., van Eeuwijk, F. A., Hayes, B. J., Hulsegge, B. & Veerkamp, R. F., 2013, Book of Abstracts of the 64th Annual Meeting of the European Federation of Animal Science, Nantes, France 26-30 August 2013. Wageningen Academic Publishers, Vol. 19. p. 225-225

Research output: Chapter in Book/Report/Conference proceedingConference paper

Open Access
Holstein
bulls
genome
genotype
cattle

Imputation of non-genotyped individuals based on genotyped relatives: a real case scenario

Bouwman, A. C., Hickey, J. M., Calus, M. P. L. & Veerkamp, R. F., 2013, Book of Abstracts of the 64th Annual Meeting of the European Federation of Animal Science, Nantes, France 26-30 August 2013. Wageningen Academic Publishers, Vol. 19. p. 605-605

Research output: Chapter in Book/Report/Conference proceedingConference paper

Open Access

International genetic evaluations for feed intake in dairy cattle

Berry, D. P., Coffey, M. P., Pryce, J., de Haas, Y., Lovendahl, P., Thaller, G., Crowley, J., Spurlock, D. M., Weigel, K., MacDonald, K. & Veerkamp, R. F., 2013, 47th Proceedings of the 2013 Interbull meeting. Nantes: Interbull, p. 52-57

Research output: Chapter in Book/Report/Conference proceedingConference paper

dairy cattle
feed intake
genetic correlation
cows
heifers

Predicting lifespan of dairy cows: phenotypic and genetic change during life

van Pelt, M. L., Veerkamp, R. F. & de Jong, G., 2013, Book of Abstracts of the 64th Annual meeting of the European Association for Animal Production (No. 19) 2013. Nantes: Wageningen Academic Publishers, Vol. 19. p. 530

Research output: Chapter in Book/Report/Conference proceedingConference paper

Required increase in training set to keep accuracy of genomic selection constant across generations

Pszczola, M. J., Strabel, T., Veerkamp, R. F., Mulder, H. A., van Arendonk, J. A. M. & Calus, M. P. L., 2013, Book of Abstracts of the 64th Annual Meeting of the European Federation of Animal Science, Nantes, France 26-30 August 2013. Wageningen Academic Publishers, Vol. 19. p. 605-605

Research output: Chapter in Book/Report/Conference proceedingConference paper

Selection for low mortality in laying hens leads to changes in brain monoamines

Kops, M., de Haas, E. N., Rodenburg, T. B., Korte-Bouws, G. A. H., Ellen, E. D., Olivier, B., Bolhuis, J. E. & Korte, S. M., 2013, Book of Abstracts 9th European Symposium on Poultry Welfare, 17 - 20 June, 2013, Uppsala, Sweden. Beekbergen: World’s Poultry Science Association, p. 86

Research output: Chapter in Book/Report/Conference proceedingConference paper

Selection on Feed intake or Feed Efficiency: A Position Paper from gDMI Breeding Goal Discussions

Veerkamp, R. F., Pryce, J., Spurlock, D. M., Berry, D. P., Coffey, M., Lovendahl, P., van der Linde, R., Bryant, J. M., Migliore, G., Wang, Z., Winters, M., Krattenmacher, N. & de Haas, Y., 2013, Interbull Bulletin nr 47. Nantes, Vol. 2013. p. 15-22

Research output: Chapter in Book/Report/Conference proceedingConference paper

feed conversion
feed intake
breeding
progeny testing
cattle breeding
2012

1000 Bull Genomes Consortium Project

Hayes, B. J., Fries, R., Lund, M. S., Boichard, D. A., Stothard, P., Veerkamp, R. F., Tassell, C., Anderson, C. L., Hulsegge, B., Guldbrandtsen, B., Rocha, D., Hinirichs, D., Bagnato, A., Georges, M., Spelman, R. J., Reecy, J. M., Archibald, A. L., Goddard, M. E. & Gredler, B., 2012, Plant and Animal Genome XX Conference, San Diego, CA, USA, 14-18 January 2012. W139

Research output: Chapter in Book/Report/Conference proceedingConference paper

bulls
genome
marker-assisted selection
dairy cattle
cattle

Bayesian stochastic search variable selection using phenotypes collected across research herds in EU

Veerkamp, R. F., Wall, E., Berry, D. P., de Haas, Y. & Coffey, M. P., 2012, Book of Abstracts of the 63rd Annual Meeting of the European Association for Animal Production. Wageningen Academic Publishers, p. 353-353

Research output: Chapter in Book/Report/Conference proceedingConference paper

Open Access

Conserving a single gene versus overall genetic diversity with the help of optimal contributions

Windig, J. J., Hulsegge, B. & Engelsma, K. A., 2012, Book of Abstracts of the 63rd Annual Meeting of the European Association for Animal Production. Wageningen Academic Publishers, p. 11-11

Research output: Chapter in Book/Report/Conference proceedingConference paper

Open Access