Research Output 1976 2020

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2019

A diagonal preconditioner for solving single-step SNPBLUP efficiently

Vandenplas, J., Calus, M. P. L., Eding, H. & Vuik, C., 2019, (Submitted) Book of Abstracts of the 70th Annual Meeting of the European Federation of Animal Science. Wageningen: Wageningen Academic, Vol. 25. p. 595-595 (Book of Abstracts).

Research output: Chapter in Book/Report/Conference proceedingAbstract

Altered hippocampal epigenetic regulation underlying reduced cognitive development in response to early life environmental insults

Schachtschneider, K. M., Welge, M. E., Auvil, L. S., Chaki, S., Rund, L. A., Madsen, O., Elmore, M. R. P., Johnson, R. W., Groenen, M. & Schook, L. B., 7 Jul 2019, ISAG 2019 Abstract Book: 37th International Society for Animal Genetics Conference, July 7-12, 2019 - Lleida, Spain. p. 158-158

Research output: Chapter in Book/Report/Conference proceedingAbstract

Epigenomics
DNA Methylation
Cognition
Genes
Overlapping Genes

Broadening the miRNA catalogue in livestock species: A contribution to the functional annotation of animal genomes.

Amaral, A. J., Anthon, C., Corsi, G., Vasconcelos, A., Marthey, S., Hoffmann, A., Lagnel, J., Haack, F., Pokharel, K., Palasca, O., Seemann, S. E., Gama, L., Groenen, M., Kantanen, J., Crooijmans, R. P. M. A., Rijnkels, M., Kalbfleisch, T., Giuffra, E., Stadler, P. F., Madsen, O. & 1 others, Gorodkin, J., 9 Jul 2019, ISAG 2019 Abstracts Book: 37th International Society for Animal Genetics Conference, July 7-12, 2019 - Lleida, Spain. p. 51-52

Research output: Chapter in Book/Report/Conference proceedingAbstract

Livestock
MicroRNAs
Genome
Sus scrofa
Technology

Computation of many relationships between metafounders replacing phantom parents

Calus, M. P. L. & Vandenplas, J., 2019, Book of Abstracts of the 70th Annual Meeting of the European Federation of Animal Science. Wageningen: Wageningen Academic, Vol. 25. p. 596-596 1 p. (Book of Abstracts).

Research output: Chapter in Book/Report/Conference proceedingAbstract

Detection of reciprocal translocations in pigs using short read sequencing

Bouwman, A. C., te Pas, M. F. W. (ed.), Derks, M. F. L. (ed.), Groenen, M. (ed.), Veerkamp, R. F. (ed.), Broekhuijse, M. (ed.) & Harlizius, B. (ed.), 28 Aug 2019, Book of Abstracts of the 70th Annual Meeting of the European Federation of Animal Science. Wageningen Academic Publishers, p. 255-255 (Book of abstracts EAAP; no. 25).

Research output: Chapter in Book/Report/Conference proceedingAbstract

Effects of group mate relatedness on body weight and variability of body weight in Nile tilapia

Marjanovic, J., Khaw, H. L., Mulder, H. A. & Bijma, P., 28 Aug 2019, Book of Abstracts of the 70th Annual Meeting of the European Federation of Animal Science. Wageningen: Wageningen Academic Publishers, p. 513

Research output: Chapter in Book/Report/Conference proceedingAbstract

group effect
Oreochromis niloticus
body weight
kin selection
rearing

Fetal genotype effects on morphomics, fatty acids composition and transcriptomics in swine

Garcia Contreras, C., Vazquez-Gomez, M., Madsen, O., Groenen, M., Astiz, S., Nunez, Y., Benitez, R., Heras-Molina, A., Fernandez, A., Isabel, B., Rey, A. I., Gonzalez-Bulnes, A. & Ovilo, C., 7 Jul 2019, ISAG 2019 Abstract Book: 37th International Society for Animal Genetics Conference, July 7-12, 2019 - Lleida, Spain. p. 148-149

Research output: Chapter in Book/Report/Conference proceedingAbstract

transcriptomics
fetus
fatty acid composition
swine
genotype

Genetics of the relationships between immunocompetence, resilience, and production in chickens

Berghof, T. V. L., Peeters, K. L. M. (ed.), Visscher, J. & Mulder, H. A. (ed.), 26 Aug 2019, p. 500-500. 1 p.

Research output: Contribution to conferenceAbstractAcademic

immunocompetence
poultry production
genetic relationships
resource allocation
chickens

High resolution copy number variation analysis using two cattle genome assemblies

Lee, Y. L., Bosse, M. (ed.), Veerkamp, R. F. (ed.), Mullaart, E. (ed.), Groenen, M. (ed.) & Bouwman, A. C. (ed.), 26 Aug 2019, Book of Abstracts of the 70th Annual Meeting of the European Federation of Animal Science. Wageningen Academic Publishers, 209 p. (Book of abstracts EAAP; no. 25).

Research output: Chapter in Book/Report/Conference proceedingAbstract

Investigating novel traits in single trait selection for their potential in selection indexes for feed efficiency of crossbred pigs

Aldridge, M. N., Bergsma, R. (ed.) & Calus, M. P. L. (ed.), 27 Oct 2019, Proceedings of the AAABG 23rd Conference. Armidale, Vol. 23. p. 218-221

Research output: Chapter in Book/Report/Conference proceedingAbstract

Open Access

Looking at nutrition related traits in pigs through genetic-tinted glasses

Verschuren, L. M. G., Calus, M. P. L., Schokker, D., Bergsma, R., Molist, F. & Jansman, A. J. M., 2019, Book of Abstracts of the 70th Annual Meeting of the European Federation of Animal Science. Wageningen: Wageningen Academic, Vol. 25. p. 257-257 1 p. (Book of Abstracts).

Research output: Chapter in Book/Report/Conference proceedingAbstract

Meta-analysis for selection of feed efficiency in crossbred pigs

Aldridge, M. N., Bergsma, R. (ed.) & Calus, M. P. L. (ed.), 27 Aug 2019, Book of Abstracts of the 70th Annual Meeting of the European Federation of Animal Science. Ghent, Belgium: Wageningen Academic Publishers, Vol. 25. p. 287-287 1 p. (EAAP Book of Abstracts; vol. 25).

Research output: Chapter in Book/Report/Conference proceedingAbstract

Microbiability of faecal nutrient digestibility in pigs

Verschuren, L. M. G., Schokker, D., Jansman, A. J. M., Bergsma, R., Molist, F. & Calus, M. P. L., 2019, Book of Abstracts of the 70th Annual Meeting of the European Federation of Animal Science. Wageningen: Wageningen Academic, Vol. 25. p. 306-306 1 p. (Book of Abstracts).

Research output: Chapter in Book/Report/Conference proceedingAbstract

Molecular understanding of different forms of dwarfism in chicken

Crooijmans, R. P. M. A., 13 Jan 2019.

Research output: Contribution to conferenceAbstractAcademic

dwarfing
chickens

Optimizing genomic breeding program designs to improve crossbred performance

Wientjes, Y. C. J., Bijma, P. & Calus, M. P. L., 27 Aug 2019, Book of Abstracts of the 70th Annual Meeting of the European Federation of Animal Science. Wageningen: Wageningen Academic Publishers, Vol. 25. p. 289-289 (EAAP Book of Abstracts; vol. 25).

Research output: Chapter in Book/Report/Conference proceedingAbstract

purebreds
crossbreds
genomics
breeding
sires

Relevance of genotyping crossbred pigs for selection of nucleus purebred pigs for finisher traits.

Sevillano, C. A., Calus, M. P. L., Neerhof, A., Vandenplas, J., Knol, E. F. & Bergsma, R., 2019, Book of Abstracts of the 70th Annual Meeting of the European Federation of Animal Science. Wageningen: Wageningen Academic, Vol. 25. p. 288-288 (Book of Abstracts).

Research output: Chapter in Book/Report/Conference proceedingAbstract

The genomes of Poeciliopsis retropinna and Poeciliopsis turrubarensis reflect differences in reproductive strategy

van Kruistum, H., Guernsey, M. W., Baker, J. C., Kloet, S. L., Groenen, M. A. M., Pollux, B. J. A. & Megens, H. J., Aug 2019.

Research output: Contribution to conferenceAbstractAcademic

The impact of non-additive effects on the genetic correlation between populations

Duenk, P., Bijma, P., Calus, M. P. L., Wientjes, Y. C. J. & van der Werf, J., 26 Aug 2019, p. 596.

Research output: Contribution to conferenceAbstractAcademic

genetic correlation
dominance (genetics)
gene frequency
epistasis
quantitative trait loci

The little Pygmy hog (Porcula salvania), a big piece in resolving the fascinating history of the complex speciation of the Suidae

Liu, L., Bosse, M., Megens, H. J. W. C., Frantz, L. A. F., Lee, Y. L., Irving-Pease, E. K., Narayan, G., Groenen, M. & Madsen, O., 9 Jul 2019, ISAG 2019 Abstracts Book: 37th International Society for Animal Genetics Conference, July 7-12, 2019 - Lleida, Spain. p. 24-25

Research output: Chapter in Book/Report/Conference proceedingAbstract

Suidae
Eurasia
wild boars
history
Sus scrofa

The use of genomics in European livestock genebank collections

Crooijmans, R. P. M. A., Colli, L., Stella, A., Ajmone-Marsan, P., Hiemstra, S. J. & Tixier-Boichard, M., 28 Aug 2019, Book of Abstracts of the 70th Annual Meeting of the European Federation of Animal Science. Wageningen: Wageningen Academic Publishers, Vol. 25. p. 365-365 (EAAP Book of Abstracts; vol. 25).

Research output: Chapter in Book/Report/Conference proceedingAbstract

gene banks
livestock
Bantam
chickens
breeds

The use of novel phenotyping technologies in animal breeding

Bovenhuis, H., 2019, Book of Abstracts of the 70th Annual Meeting of the European Federation of Animal Science. Wageningen Academic Publishers, p. 601-601 (EAAP Book of abstracts; no. 25).

Research output: Chapter in Book/Report/Conference proceedingAbstract

2018

An equation to predict accuracy of multi-breed genomic prediction model with multiple random effects

Raymond, B., Bouwman, A. C., Wientjes, Y. C. J., Schrooten, C., Houwing-Duistermaat, J. J. & Veerkamp, R. F., 27 Aug 2018, Book of Abstracts of the 69th Annual Meeting of the European Federation of Animal Science. Wageningen: Wageningen Academic Publishers, p. 121-121 (Book of abstracts; no. 24).

Research output: Chapter in Book/Report/Conference proceedingAbstract

Boosted regression trees to predict pneumonia, growth and meat percentage of slaughter pigs

Mollenhorst, H., de Greef, K. H., Ducro, B. J., Hulsegge, B., Hoving, A. H., Veerkamp, R. F. & Kamphuis, C., 27 Aug 2018, Book of Abstracts of the 69th Annual Meeting of the European Federation of Animal Science. Wageningen: Wageningen Academic Publishers, p. 437-437 (Book of abstracts; no. 24).

Research output: Chapter in Book/Report/Conference proceedingAbstract

Breeding programs to improve survival time in laying hens

Ellen, E. D. & Bijma, P., Aug 2018, Book of Abstracts of the 69th Annual Meeting of the European Federation of Animal Science. Wageningen Academic Publishers, Vol. 24. p. 526-526

Research output: Chapter in Book/Report/Conference proceedingAbstract

laying hens
breeding
genotype
selection index
selection methods

Capturing indirect genetic effects on phenotypic variability

Marjanovic, J., Mulder, H. A., Ronnegard, L., de Koning, D. J. & Bijma, P., Aug 2018, Book of Abstracts of the 69th Annual Meeting of the European Federation of Animal Science. Wageningen Academic Publishers, p. 577-577 (Book of abstracts; vol. 24).

Research output: Chapter in Book/Report/Conference proceedingAbstract

plant competition
genetic variation
quantitative traits
statistical models
aquaculture

Developing resilience indicator traits based on longitudinal data: opportunities and challenges

Mulder, H. A., Poppe, H. W. M. & Berghof, T. V. L., Aug 2018, Book of Abstracts of the 69th Annual Meeting of the European Federation of Animal Science. Wageningen Academic Publishers, p. 266-266 (Book of abstracts; vol. 24).

Research output: Chapter in Book/Report/Conference proceedingAbstract

animals
economic valuation
labor
herds
ketosis

Development of resilience indicators using deviations in milk yield from the lactation curve

Poppe, H. W. M., Mulder, H. A. & Veerkamp, R. F., Aug 2018, Book of Abstracts of the 69th Annual Meeting of the European Federation of Animal Science. Wageningen Academic Publishers, p. 268-268 (Book of abstracts; vol. 24).

Research output: Chapter in Book/Report/Conference proceedingAbstract

lactation curve
milk yield
cows
genetic correlation
heat

Effects of specific breeding lines for organic dairy production in Denmark

Slagboom, M., Mulder, H. A., Sorensen, A. C., Hjorto, L., Thomasen, J. R. & Kargo, M., Aug 2018, Book of Abstracts of the 69th Annual Meeting of the European Federation of Animal Science. Wageningen Academic Publishers, p. 575-575 (Book of abstracts; vol. 24).

Research output: Chapter in Book/Report/Conference proceedingAbstract

breeding lines
Denmark
milk production
breeding
genetic improvement

Efficient computational strategies for multivariate single-step SNPBLUP

Vandenplas, J., Eding, H. & Calus, M. P. L., 27 Aug 2018, Book of Abstracts of the 69th Annual Meeting of the European Federation of Animal Science. Wageningen: Wageningen Academic Publishers, p. 429-426 (Book of abstracts; no. 24).

Research output: Chapter in Book/Report/Conference proceedingAbstract

Estimation of genetic parameters for body weight and feed efficiency traits in a broiler chicken population using genomic information.

Mebratie, W., Bovenhuis, H. & Jensen, J., Feb 2018, Proceedings of the World Congress on Genetics Applied to Livestock Production. Vol. 11.819. 4 p.

Research output: Chapter in Book/Report/Conference proceedingAbstract

Open Access
feed conversion
broiler chickens
body weight
genomics
pedigree

Faecal microbiome profiles can predict complex traits in pigs

Schokker, D., Verschuren, L., Bergsma, R., Molist, F. & Calus, M. P. L., 27 Aug 2018, Book of Abstracts of the 69th Annual Meeting of the European Federation of Animal Science. Wageningen Academic Publishers, p. 205-2015 1 p. (EAAP Book of Abstracts; vol. 24).

Research output: Chapter in Book/Report/Conference proceedingAbstract

Genetic correlations between methane production and traits from Polish national evaluation

Pszczola, M., Calus, M. P. L. & Strabel, T., 27 Aug 2018, Book of Abstracts of the 69th Annual Meeting of the European Federation of Animal Science. Wageningen: Wageningen Academic Publishers, p. 185-185 (Book of abstracts; no. 24).

Research output: Chapter in Book/Report/Conference proceedingAbstract

Genotype by environment interaction for growth and survival of Nile tilapia in aerated and non-aerated ponds

Mengistu, S., Komen, J., Benzie, J. A. H., Khaw, H. L. & Mulder, H. A., Jul 2018, Session abstracts ISGA 2018. 1 p.

Research output: Chapter in Book/Report/Conference proceedingAbstract

Open Access

Impact of merging different commercial lines on genetic diversity of the Dutch Landrace pigs

Hulsegge, B., Calus, M. P. L., Hoving-Bolink, A. H., Lopes, M. S., Megens, H. J. W. C. & Oldenbroek, J. K., 27 Aug 2018, Book of Abstracts of the 69th Annual Meeting of the European Federation of Animal Science. Wageningen: Wageningen Academic Publishers, p. 554-554 (Book of abstracts; no. 24).

Research output: Chapter in Book/Report/Conference proceedingAbstract

Improving genomic prediction in numerically small Red dairy cattle populations

Marjanovic, J., Hulsegge, B., Schurink, A. & Calus, M. P. L., 27 Aug 2018, Book of Abstracts of the 69th Annual Meeting of the European Federation of Animal Science. Wageningen: Wageningen Academic Publishers, p. 121-121 (Book of abstracts; no. 24).

Research output: Chapter in Book/Report/Conference proceedingAbstract

Improving phosphorus efficiency using infrared predicted milk phosphorus content

Bovenhuis, H., Jibrila, I. & Dijkstra, J., 2018, Book of Abstracts of the 69th Annual Meeting of the European Federation of Animal Science. Vol. 24. p. 286-286

Research output: Chapter in Book/Report/Conference proceedingAbstract

In silico predictions of variant deleteriousness in the genomes of pig species

Gross, C., Derks, M., de Ridder, D. & Reinders, M., 12 Dec 2018. 1 p.

Research output: Contribution to conferenceAbstractAcademic

Open Access

Intestinal stem-cell organoids as experimental models to investigate feed efficiency

Ellen, E. D., Taverne, N., Taverne-Thiele, J. J., Madsen, O., Woelders, H., Bergsma, R., Knol, E. F., Kar, S. K., de Haas, Y., Groenen, M. & Wells, J. M., 28 Aug 2018, Book of Abstracts of the 69th Annual Meeting of the European Federation of Animal Science. Wageningen Academic Publishers, p. 478-478 (Book of Abstracts; vol. 24).

Research output: Chapter in Book/Report/Conference proceedingAbstract

stem cells
feed conversion
nutrient transport
livestock production
marker-assisted selection

QTL detection in a breeding pedigree of diploid potato

Korontzis, G., Malosetti, M., Mulder, H. A., Maliepaard, C. A., Víquez Zamora, A. M., Veerkamp, R. F. & van Eeuwijk, F. A., Sep 2018.

Research output: Contribution to conferenceAbstractAcademic

The genetic background of second litter syndrome in pigs

Sell-Kubiak, E. B., Knol, E. F. & Mulder, H. A., Aug 2018, Book of Abstracts of the 69th Annual Meeting of the European Federation of Animal Science. Wageningen Academic Publishers, p. 335

Research output: Chapter in Book/Report/Conference proceedingAbstract

genetic background
swine

The genetics of phosphorylation of caseins in bovine milk

Visker, M. H. P. W., Fang, F. H., Martin, P. & Bovenhuis, H., Nov 2018, 15th International Symposium Milk Genomics & Human Health. p. 23-24

Research output: Chapter in Book/Report/Conference proceedingAbstract

The influence of genetic selection of horses of the KWPN on their dressage and showjumping performance results

Ducro, B. J., 26 Jan 2018, 1st International conference Modern reproduction of livestock, 26th of January 2018. Kuczaj, M. (ed.). p. 31-31

Research output: Chapter in Book/Report/Conference proceedingAbstract

Open Access
genetic trend
horses
breeding
horse riding
jumping

Tracking and monitoring of individual animals kept in large groups

van der Sluis, M., Ellen, E. D., de Haas, Y. & Rodenburg, T. B., 5 Feb 2018, Abstract of the WIAS Science Day 2018. p. 41-41

Research output: Chapter in Book/Report/Conference proceedingAbstract

Understanding the Effect of the Environmental Conditions on the Suitability of a Breed for Different Agro-Ecological Zones

Lozano Jaramillo, M., Bastiaansen, J. W. M., Dessie, T. & Komen, J., 2018, Proceedings of the World Congress on Genetics Applied to Livestock Production. Auckland: IAVS / Massey University, Vol. 11. 4 p. 394

Research output: Chapter in Book/Report/Conference proceedingAbstract

Open Access
agroecological zones
breeds
environmental factors
livestock
Egypt

Variance estimates from the algorithm for proven and young animals are similar to current methods

Aldridge, M. N., Vandenplas, J., Bergsma, R. & Calus, M. P. L., 27 Aug 2018, Book of abstracts of the 69th Annual meeting of the European Federation of Animal Science. Wageningen: Wageningen Academic Publishers, p. 593-593 (Book of abstracts; no. 24).

Research output: Chapter in Book/Report/Conference proceedingAbstract

2017

A review of the purebred-crossbred correlation in pigs: theory, estimates, and reporting

Calus, M. P. L. & Wientjes, Y., 2017, Book of Abstracts of the 68th Annual Meeting of the European Federation of Animal Science. Wageningen Academic Publishers, p. 242-242

Research output: Chapter in Book/Report/Conference proceedingAbstract

purebreds
crossbreds
swine
animals
genetic background

A systematic review of management factors affecting growth, feed conversion ratio and survival in Nile tilapia

Mengistu, S., Mulder, H. A., Benzie, J. A. H. & Komen, J., 21 Oct 2017, International Conference and Exposition EAS. p. 753-754 2 p. 152

Research output: Chapter in Book/Report/Conference proceedingAbstract

Open Access
systematic review
Oreochromis niloticus
growth factors
feed conversion
heat

Benefit cost analysis of aquaculture breeding programs

Janssen, K. P. E., Saatkamp, H. W. & Komen, J., 2017, Book of Abstracts of the 68th Annual Meeting of the European Federation of Animal Science. Wageningen: Wageningen Academic Publishers, p. 429-429 (Book of abstracts; no. 23).

Research output: Chapter in Book/Report/Conference proceedingAbstract