Description
Plants developed plasticity to environmental conditions, such as temperature, that allows their adaptation. A change in ambient temperature leads to changes in the transcriptome in plants. Here we study changes in the splicing of Arabidopsis thaliana using an RNA-seq approach. Plants were growing in short day conditions (8h light/16h dark) at 16°C for 5 weeks and then moved to 25°C. We monitor changes in the transcriptome in the time, material was harvested 24h, 3 days and 5 days after the temperature change.
| Date made available | 10 May 2017 |
|---|---|
| Publisher | Wageningen University |
Accession numbers
- GSE85281
- PRJNA338071
Research output
- 2 Article
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Arabidopsis thaliana ambient temperature responsive lncRNAs
Severing, E., Faino, L., Jamge, S., Busscher, M., Kuijer-Zhang, Y., Bellinazzo, F., Busscher-Lange, J., Fernández, V., Angenent, G. C., Immink, R. G. H. & Pajoro, A., 13 Jul 2018, In: BMC Plant Biology. 18, 1, 145.Research output: Contribution to journal › Article › Academic › peer-review
Open Access61 Link opens in a new tab Citations (Scopus) -
Histone H3 lysine 36 methylation affects temperature-induced alternative splicing and flowering in plants
Pajoro, A., Severing, E., Angenent, G. C. & Immink, R. G. H., 2017, In: Genome Biology. 18, 12 p., 102.Research output: Contribution to journal › Article › Academic › peer-review
Open Access148 Link opens in a new tab Citations (Scopus)
Datasets
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H3K36me3 histone modification and regulation of ambient temperature-induced alternative splicing in Arabidopsis
Pajoro, A. (Creator), Wageningen University, 10 May 2017
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE85282
Dataset
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H3K36me3 ChIP-seq
Pajoro, A. (Creator) & Immink, G. H. (Creator), Wageningen University, 10 May 2017
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE85279
Dataset
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Temperature induced alternative splicing is affected in sdg8 and sdg26
Pajoro, A. (Creator), Severing, E. I. (Creator) & Immink, G. H. (Creator), Wageningen University, 10 May 2017
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE85280
Dataset
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