Description
This repository contains the supplementary data and source data files for BiG-SCAPE 2.0 and BiG-SLiCE 2.0 publication:
performance_benchmarks_notebooks.gz: Supplementary scripts used to generate Figure 2, Supplementary tables S3-S5 and Supplementary Figure S8, which are supported by the relevant source data: source_data_performance_benchmarks.tar.gz.
curated_datasets.tar.gz: Benchmarking datasets and curated GCF assignments.
curated_outputs.tar.gz: BiG-SCAPE Cluster and BiG-SLiCE output.
curated_benchmarked.tar.gz: BiG-SCAPE Benchmark output, and supplementary scripts used to generate Figure 2 and Supplementary Figure S8.
ExtStrat_MIBiG.db: BiG-SCAPE 2.0 clustering output for MIBiG BGCs used to generate Supplementary Figure S4 and Supplementary Table S1.
output_as_db_full_spawn_class.tar.gz: BiG-SCAPE 2.0 Cluster output for antiSMASH database 4.0.
as_db_bigslice_out.tar.gz: BiG-SLiCE 2.0 output for antiSMASH database 4.0.BiG-SCAPE-2.0.0-beta.8.tar.gz, BiG-SCAPE-2.0.0-beta.1.tar.gz: packaged versions of the BiG-SCAPE 2.0 code
bigslice-2.0.0.tar.gz: packaged BiG-SLiCE 2.0 code
performance_benchmarks_notebooks.gz: Supplementary scripts used to generate Figure 2, Supplementary tables S3-S5 and Supplementary Figure S8, which are supported by the relevant source data: source_data_performance_benchmarks.tar.gz.
curated_datasets.tar.gz: Benchmarking datasets and curated GCF assignments.
curated_outputs.tar.gz: BiG-SCAPE Cluster and BiG-SLiCE output.
curated_benchmarked.tar.gz: BiG-SCAPE Benchmark output, and supplementary scripts used to generate Figure 2 and Supplementary Figure S8.
ExtStrat_MIBiG.db: BiG-SCAPE 2.0 clustering output for MIBiG BGCs used to generate Supplementary Figure S4 and Supplementary Table S1.
output_as_db_full_spawn_class.tar.gz: BiG-SCAPE 2.0 Cluster output for antiSMASH database 4.0.
as_db_bigslice_out.tar.gz: BiG-SLiCE 2.0 output for antiSMASH database 4.0.BiG-SCAPE-2.0.0-beta.8.tar.gz, BiG-SCAPE-2.0.0-beta.1.tar.gz: packaged versions of the BiG-SCAPE 2.0 code
bigslice-2.0.0.tar.gz: packaged BiG-SLiCE 2.0 code
| Date made available | 19 Aug 2025 |
|---|---|
| Publisher | Wageningen University & Research |
Research output
- 1 Preprint
-
BiG-SCAPE 2.0 and BiG-SLiCE 2.0: scalable, accurate and interactive sequence clustering of metabolic gene clusters
Draisma, A. M., Sales E Santos Loureiro, C. C., Louwen, N. L. L., Kautsar, S. A., Navarro Munoz, J. C., Doering, D. T., Mouncey, N. J. & Medema, M. H., 25 Aug 2025, BioRxiv.Research output: Working paper › Preprint
Open Access
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