RNA-seq raw reads of chicken hypothalamus and breast muscle

Jacqueline Smith (Creator)
James M. Alfieri (Creator)
Nick Anthony (Creator)
Peter Arensburger (Creator)
Giridhar Athrey (Creator)
Jennifer Balacco (Creator)
Adam Balic (Creator)
P. Bardou (Creator)
Paul Barela (Creator)
Y. Bigot (Creator)
Heath Blackmon (Creator)
Pavel M. Borodin (Creator)
Richard Carroll (Creator)
Meya C. Casono (Creator)
M. Charles (Creator)
Hans Cheng (Creator)
Maddie Chiodi (Creator)
Lacey Cigan (Creator)
Lyndon M. Coghill (Creator)
Richard Crooijmans (Creator)
Neelabja Das (Creator)
Sean Davey (Creator)
Asya Davidian (Creator)
Fabien Degalez (Creator)
J.C.M. Dekkers (Creator)
Martijn Derks (Creator)
Abigail B. Diack (Creator)
Appolinaire Djikeng (Creator)
Yvonne Drechsler (Creator)
Alexander Dyomin (Creator)
Olivier Fedrigo (Creator)
Steven R. Fiddaman (Creator)
Giulio Formenti (Creator)
Laurent A.F. Frantz (Queen Mary University of London, Ludwig Maximilian University of Munich) (Creator)
J.E. Fulton (Creator)
E. Gaginskaya (Creator)
S. Galkina (Creator)
R. Gallardo (Creator)
Johannes Geibel (Creator)
Almas A. Gheyas (Creator)
Jonatan Godinez Madrigal (Creator)
Ashton Goodell (Creator)
A. Graves (Creator)
Darren K. Griffin (Creator)
Ben Haase (Creator)
Jian Lin Han (Creator)
Olivier Hanotte (Creator)
J. Henderson (Creator)
Hou Zhuo-Cheng (Creator)
K. Howe (Creator)
Bao Lam Huynh (Creator)
Evans Ilatsia (Creator)
D. Jarvis (Creator)
S. Johnson (Creator)
J. Kaufman (Creator)
T. Kelly (Creator)
Steve Kemp (Creator)
Carina Kern (Creator)
Jacob H. Keroack (Creator)
Christophe Klopp (Creator)
S. Lagarrigue (Creator)
S. Lamont (Creator)
M. Lange (Creator)
Anika Lanke (Creator)
M.J. Larkin (Creator)
G. Larson (Creator)
John King N. Layos (Creator)
Ophélie Lebrasseur (Creator)
Lyubov P. Malinovskaya (Creator)
R. Martin (Creator)
Maria Luisa Martin Cerezo (Creator)
S.A. Mason (Creator)
M. McCarthy (Creator)
Michael J. McGrew (Creator)
Jacquelyn Mountcastle (Creator)
Christine Kamidi Muhonja (Creator)
William M. Muir (Creator)
Kévin Muret (Creator)
Terence Murphy (Creator)
Ismael Ng'ang'a (Creator)
Masahide Nishibori (Creator)
R. O'Connor (Creator)
Moses Ogugo (Creator)
R. Okimoto (Creator)
Kevin Okoth Ouko (Creator)
H. Patel (Creator)
Fernando Araujo Perini (Creator)
María Ines Pigozzi (Creator)
K. Potter (Creator)
D. Price (Creator)
Christian Reimer (Creator)
E. Rice (Creator)
Nicolas Rocos (Creator)
Thomas Rogers (Creator)
Perot Saelao (Creator)
Jens Schauer (Creator)
Robert D. Schnabel (Creator)
A. Schneider (Creator)
Henner Simianer (Creator)
A. Smith (Creator)
P. Stevens (Creator)
Kyle Stiers (Creator)
C.K. Tiambo (Creator)
M. Tixier-Boichard (Creator)
Anna A. Torgasheva (Creator)
Alan Tracey (Creator)
Clive A. Tregaskes (Creator)
Lonneke Vervelde (Creator)
Ying Wang (Feed the Future Innovation Lab for Genomics to Improve Poultry (GIP), University of California at Davis) (Creator)
W.C. Warren (Creator)
Paul D. Waters (Creator)
David Webb (Creator)
Steffen Weigend (Creator)
A. Wolc (Creator)
E. Wright (Creator)
Dominic Wright (Creator)
Zhou Wu (University of Edinburgh) (Creator)
Masahito Yamagata (Creator)
Chen Yang (Creator)
Ting Ting Yin (Creator)
C. Young (Creator)
Guojie Zhang (Creator)
B. Zhao (Creator)
Huaijun Zhou (Creator)

Dataset

Description

The objective of the study was to identify genes, gene networks, and signaling pathways associated with heat stress under Newcastle disease virus (NDV infection in the hypothalamus and the breast muscle of chickens by transcriptome profiling, using two highly genetically distinct inbred chicken lines (Leghorn and Fayoumi).

Date made available	1 Nov 2022
Publisher	University of California

Keywords

Newcastle disease virus
chickens
Leghorn
Fayoumi

Accession numbers

PRJNA896699

Access Dataset

https://www.ncbi.nlm.nih.gov/bioproject/896699

1 Article

Fourth Report on Chicken Genes and Chromosomes 2022
Smith, J., Alfieri, J. M., Anthony, N., Arensburger, P., Athrey, G. N., Balacco, J., Balic, A., Bardou, P., Barela, P., Bigot, Y., Blackmon, H., Borodin, P. M., Carroll, R., Casono, M. C., Charles, M., Cheng, H., Chiodi, M., Cigan, L., Coghill, L. M. & Crooijmans, R. & 104 others, Das, N., Davey, S., Davidian, A., Degalez, F., Dekkers, J. M., Derks, M., Diack, A. B., Djikeng, A., Drechsler, Y., Dyomin, A., Fedrigo, O., Fiddaman, S. R., Formenti, G., Frantz, L. A. F., Fulton, J. E., Gaginskaya, E., Galkina, S., Gallardo, R. A., Geibel, J., Gheyas, A. A., Godinez, C. J. P., Goodell, A., Graves, J. A. M., Griffin, D. K., Haase, B., Han, J. L., Hanotte, O., Henderson, L. J., Hou, Z. C., Howe, K., Huynh, L., Ilatsia, E., Jarvis, E. D., Johnson, S. M., Kaufman, J., Kelly, T., Kemp, S., Kern, C., Keroack, J. H., Klopp, C., Lagarrigue, S., Lamont, S. J., Lange, M., Lanke, A., Larkin, D. M., Larson, G., Layos, J. K. N., Lebrasseur, O., Malinovskaya, L. P., Martin, R. J., Cerezo, M. L. M., Mason, A. S., McCarthy, F. M., McGrew, M. J., Mountcastle, J., Muhonja, C. K., Muir, W., Muret, K., Murphy, T. D., Ng'ang'a, I., Nishibori, M., O'Connor, R. E., Ogugo, M., Okimoto, R., Ouko, O., Patel, H. R., Perini, F., Pigozzi, M. I., Potter, K. C., Price, P. D., Reimer, C., Rice, E. S., Rocos, N., Rogers, T. F., Saelao, P., Schauer, J., Schnabel, R. D., Schneider, V. A., Simianer, H., Smith, A., Stevens, M. P., Stiers, K., Tiambo, C. K., Tixier-Boichard, M., Torgasheva, A. A., Tracey, A., Tregaskes, C. A., Vervelde, L., Wang, Y., Warren, W. C., Waters, P. D., Webb, D., Weigend, S., Wolc, A., Wright, A. E., Wright, D., Wu, Z., Yamagata, M., Yang, C., Yin, Z. T., Young, M. C., Zhang, G., Zhao, B. & Zhou, H., 1 Jul 2023, In: Cytogenetic and Genome Research. 162, 8-9, p. 405-528 124 p.
Research output: Contribution to journal › Article › Academic

Open Access
14 Citations (Scopus)

Cite this

Smith, J. (Creator), Alfieri, J. M. (Creator), Anthony, N. (Creator), Arensburger, P. (Creator), Athrey, G. N. (Creator), Balacco, J. (Creator), Balic, A. (Creator), Bardou, P. (Creator), Barela, P. (Creator), Bigot, Y. (Creator), Blackmon, H. (Creator), Borodin, P. M. (Creator), Carroll, R. (Creator), Casono, M. C. (Creator), Charles, M. (Creator), Cheng, H. (Creator), Chiodi, M. (Creator), Cigan, L. (Creator), Coghill, L. M. (Creator), Crooijmans, R. (Creator), Das, N. (Creator), Davey, S. (Creator), Davidian, A. (Creator), Degalez, F. (Creator), Dekkers, J. M. (Creator), Derks, M. (Creator), Diack, A. B. (Creator), Djikeng, A. (Creator), Drechsler, Y. (Creator), Dyomin, A. (Creator), Fedrigo, O. (Creator), Fiddaman, S. R. (Creator), Formenti, G. (Creator), Frantz, L. A. F. (Creator), Fulton, J. E. (Creator), Gaginskaya, E. (Creator), Galkina, S. (Creator), Gallardo, R. A. (Creator), Geibel, J. (Creator), Gheyas, A. A. (Creator), Godinez, C. J. P. (Creator), Goodell, A. (Creator), Graves, J. A. M. (Creator), Griffin, D. K. (Creator), Haase, B. (Creator), Han, J. L. (Creator), Hanotte, O. (Creator), Henderson, L. J. (Creator), Hou, Z. C. (Creator), Howe, K. (Creator), Huynh, L. (Creator), Ilatsia, E. (Creator), Jarvis, E. D. (Creator), Johnson, S. M. (Creator), Kaufman, J. (Creator), Kelly, T. (Creator), Kemp, S. (Creator), Kern, C. (Creator), Keroack, J. H. (Creator), Klopp, C. (Creator), Lagarrigue, S. (Creator), Lamont, S. J. (Creator), Lange, M. (Creator), Lanke, A. (Creator), Larkin, D. M. (Creator), Larson, G. (Creator), Layos, J. K. N. (Creator), Lebrasseur, O. (Creator), Malinovskaya, L. P. (Creator), Martin, R. J. (Creator), Cerezo, M. L. M. (Creator), Mason, A. S. (Creator), McCarthy, F. M. (Creator), McGrew, M. J. (Creator), Mountcastle, J. (Creator), Muhonja, C. K. (Creator), Muir, W. (Creator), Muret, K. (Creator), Murphy, T. D. (Creator), Ng'ang'a, I. (Creator), Nishibori, M. (Creator), O'Connor, R. E. (Creator), Ogugo, M. (Creator), Okimoto, R. (Creator), Ouko, O. (Creator), Patel, H. R. (Creator), Perini, F. (Creator), Pigozzi, M. I. (Creator), Potter, K. C. (Creator), Price, P. D. (Creator), Reimer, C. (Creator), Rice, E. S. (Creator), Rocos, N. (Creator), Rogers, T. F. (Creator), Saelao, P. (Creator), Schauer, J. (Creator), Schnabel, R. D. (Creator), Schneider, V. A. (Creator), Simianer, H. (Creator), Smith, A. (Creator), Stevens, M. P. (Creator), Stiers, K. (Creator), Tiambo, C. K. (Creator), Tixier-Boichard, M. (Creator), Torgasheva, A. A. (Creator), Tracey, A. (Creator), Tregaskes, C. A. (Creator), Vervelde, L. (Creator), Wang, Y. (Creator), Warren, W. C. (Creator), Waters, P. D. (Creator), Webb, D. (Creator), Weigend, S. (Creator), Wolc, A. (Creator), Wright, A. E. (Creator), Wright, D. (Creator), Wu, Z. (Creator), Yamagata, M. (Creator), Yang, C. (Creator), Yin, Z. T. (Creator), Young, M. C. (Creator), Zhang, G. (Creator), Zhao, B. (Creator), Zhou, H. (Creator) (1 Nov 2022). RNA-seq raw reads of chicken hypothalamus and breast muscle. University of California.