Pectobacterium genome sequencing for pangenomics

Eef Jonkheer (Creator)
Balázs Brankovics (Creator)
Ilse Houwers (Creator)
Jan van der Wolf (Creator)
Peter Bonants (Creator)
Robert A.M. Vreeburg (Creator)
Robert Bollema (Creator)
Jorn R. de Haan (Creator)
Lidija Berke (Genetwister Technologies B.V.) (Creator)
Sandra Smit (Creator)
Dick de Ridder (Creator)
Theo van der Lee (Creator)

Dataset

Description

Expand the set of available Pectobacterium genomes and the representation of agriculturally relevant strains. The genomes are used for a pangenomic investigation of the genus.

Date made available	28 Jul 2020
Publisher	Wageningen Plant Research

Keywords

Genome sequencing and assembly
Pectobacterium aquaticum
Pectobacterium brasiliense
Pectobacterium polaris
Pectobacterium punjabense
Pectobacterium versatile
Pectobacterium parmentieri

Accession numbers

PRJNA649220

Access Dataset

https://www.ncbi.nlm.nih.gov/bioproject/PRJNA649220

1 Article

The Pectobacterium pangenome, with a focus on Pectobacterium brasiliense, shows a robust core and extensive exchange of genes from a shared gene pool
Jonkheer, E. M., Brankovics, B., Houwers, I. M., van der Wolf, J. M., Bonants, P. J. M., Vreeburg, R. A. M., Bollema, R., de Haan, J. R., Berke, L., Smit, S., de Ridder, D. & van der Lee, T. A. J., 14 Apr 2021, In: BMC Genomics. 22, 1, 265.
Research output: Contribution to journal › Article › Academic › peer-review

Open Access
25 Citations (Scopus)

Cite this

Jonkheer, E. (Creator), Brankovics, B. (Creator), Houwers, I. (Creator), van der Wolf, J. (Creator), Bonants, P. (Creator), Vreeburg, R. A. M. (Creator), Bollema, R. (Creator), de Haan, J. R. (Creator), Berke, L. (Creator), Smit, S. (Creator), de Ridder, D. (Creator), van der Lee, T. (Creator) (28 Jul 2020). Pectobacterium genome sequencing for pangenomics. Wageningen Plant Research.