Description
Dataset used in the NPOmix validation (described in the publication) that includes antiSMASH results from 1,040 PoDP paired samples and 21 MGF metabolite spectra with known BGCs for testing. The input for antiSMASH were FASTA genomes from NCBI that are listed at the PoDP database (https://pairedomicsdata.bioinformatics.nl). We removed all files from the antiSMASH output folder but the GenBank (.gbk) files for the BGCs. The NPOmix publication can be found here: https://academic.oup.com/pnasnexus/advance-article/doi/10.1093/pnasnexus/pgac257/6847575. This publication used the 21 MGFs for validation plus brasilicard A and palmyramide A (to be included soon).
| Date made available | 13 Jun 2022 |
|---|---|
| Publisher | University of California |
Research output
- 1 Article
-
NPOmix: A machine learning classifier to connect mass spectrometry fragmentation data to biosynthetic gene clusters
Leão, T. F., Wang, M., da Silva, R., Gurevich, A., Bauermeister, A., Gomes, P. W. P., Brejnrod, A., Glukhov, E., Aron, A. T., Louwen, J. J. R., Kim, H. W., Reher, R., Fiore, M. F., van der Hooft, J. J. J., Gerwick, L., Gerwick, W. H., Bandeira, N. & Dorrestein, P. C., Nov 2022, In: PNAS Nexus. 1, 5, pgac257.Research output: Contribution to journal › Article › Academic › peer-review
Open Access24 Link opens in a new tab Citations (Scopus)
Cite this
- DataSetCite