NPOmix 1: antiSMASH results from 1,040 PoDP paired samples

  • Tiago F. Leão (Creator)
  • Mingxun Wang (Creator)
  • Ricardo R. da Silva (Creator)
  • Alexey Gurevich (Creator)
  • Anelize Bauermeister (Creator)
  • Paulo W.P. Gomes (Creator)
  • Asker Brejnrod (Creator)
  • Evgenia Glukhov (Creator)
  • Allegra T. Aron (Creator)
  • Joris Louwen (Creator)
  • Hyun Woo Kim (Creator)
  • Raphael Reher (Creator)
  • Marli F. Fiore (Creator)
  • Justin van der Hooft (Creator)
  • Lena Gerwick (Creator)
  • William H. Gerwick (Creator)
  • Nuno Bandeira (Creator)
  • Pieter C. Dorrestein (Creator)

Dataset

Description

Dataset used in the NPOmix validation (described in the publication) that includes antiSMASH results from 1,040 PoDP paired samples and 21 MGF metabolite spectra with known BGCs for testing. The input for antiSMASH were FASTA genomes from NCBI that are listed at the PoDP database (https://pairedomicsdata.bioinformatics.nl). We removed all files from the antiSMASH output folder but the GenBank (.gbk) files for the BGCs. The NPOmix publication can be found here: https://academic.oup.com/pnasnexus/advance-article/doi/10.1093/pnasnexus/pgac257/6847575. This publication used the 21 MGFs for validation plus brasilicard A and palmyramide A (to be included soon).
Date made available13 Jun 2022
PublisherUniversity of California

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