Research output per year
Research output per year
Description
In this study we assessed prokaryotic community and metabolite profiles of the three deep sea sponges: W. bursa, S. fortis and G. barretti collected at the Davis Strait at depth range of 200 - 1400 m. Microbial composition was investigated using 16S rRNA gene amplicon sequencing by applying the Illumina MiSeq technology and metabolomic profiles were screened using UPLC-QTOF mass spectrometry. The overall aim of this study is to investigate to what extend depth influences microbial composition and metabolite profiles of the deep sea sponges.
| Date made available | 25 Apr 2018 |
|---|---|
| Publisher | Wageningen University |
Keywords
- Raw sequence reads
- deep sea sponges
- Weberella bursa
- Stryphnus fortis
- Geodia barretti
Accession numbers
- PRJNA453542
- SRP142603
- SRX3993926–SRX3993970
Research output
- 1 Article
-
Oceanographic setting influences the prokaryotic community and metabolome in deep-sea sponges
Steffen, K., Indraningrat, A. A. G., Erngren, I., Haglöf, J., Becking, L. E., Smidt, H., Yashayaev, I., Kenchington, E., Pettersson, C., Cárdenas, P. & Sipkema, D., 1 Mar 2022, In: Scientific Reports. 12, 3356.Research output: Contribution to journal › Article › Academic › peer-review
Open Access5 Citations (Scopus)
Datasets
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Collection data, 16S microbiome and metabolome of Geodia barretti, Stryphnus fortis and Weberella bursa, in the Davis Strait
Steffen, K. (Creator), Indraningrat, A. A. G. (Creator), Erngren, I. (Creator), Haglöf, J. (Creator), Becking, L. (Creator), Kenchington, E. (Creator), Smidt, H. (Creator), Yashayaev, I. (Creator), Pettersson, C. (Creator), Cárdenas, P. (Creator) & Sipkema, D. (Creator), Wageningen University & Research, 2019
Dataset
Projects
- 1 Finished
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SponGES: Deep-sea Sponge Grounds Ecosystems of the North Atlantic: an integrated approach towards their preservation and sustainable exploitation
1/03/16 → 31/12/20
Project: EU research project