MEANtools is a computational pipeline that integrates multi-omics data to identify metabolites and predict biosynthetic pathways

MEANtools is a computational pipeline that integrates multi-omics data to identify metabolites and predict biosynthetic pathways

https://www.biorxiv.org/content/10.1101/2024.12.22.629970v1

This repository contains data for the meantools repository https://github.com/kumarsaurabh20/meantools 

Data:

1. Lotus database in SQLite format

2. RetroRules formatted data (loose, medium, and strict datasets) 

3. EC-pfam IDs map

4. RNA-seq expression matrix (normalized) from Jeon et al. 2020

5. Jeon_bacterial.sqlite (output of gene-metabolite correlations, calculated edge-scores and functional clusters for Bacterial samples)

6. Jeon_Fungal.sqlite (output of gene-metabolite correlations, calculated edge-scores and functional clusters for Fungal samples)