Identification of microRNA targets in tomato fruit development using high-throughput sequencing and degradome analysis

Dataset

Description

By using parallel analysis of RNA ends (PARE) for global identification of miRNA targets and comparing four different stages of tomato fruit development we identified a large number of target genes of miRNAs.
PARE libraries were produced, one each, for tomato fruits at 5 days after pollination, mature green fruit, Breaker fruit, and 7 days after Breaker stge fruits
Date made available12 Nov 2013
PublisherPlant Research International

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Research Output

Identification of microRNA targets in tomato fruit development using high-throughput sequencing and degradome analysis

Karlova, R. B., van Haarst, J. C., Maliepaard, C. A., van de Geest, H. C., Bovy, A. G., Lammers, M., Angenent, G. C. & de Maagd, R. A., 2013, In : Journal of Experimental Botany. 64, 7, p. 1863-1878

Research output: Contribution to journal › Article › Academic › peer-review

    • 133 Citations (Scopus)

    Datasets

    Gene expression in three stages of ripening tomato fruit

    de Maagd, R. (Creator) & Bovy, A. (Creator), Plant Research International, 5 Apr 2013

    https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE42783

    Dataset

    Comparison of tomato fruit gene expression data obtained by microarray analysis and by treatment of degradome sequencing data as an RNAseq experiment

    de Maagd, R. (Creator), Plant Research International, 12 Nov 2013

    https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE42784

    Dataset

    Cite this

    de Maagd, R. A. (Creator), Karlova, R. B. (Creator), van Haarst, J. C. (Creator) (12 Nov 2013). Identification of microRNA targets in tomato fruit development using high-throughput sequencing and degradome analysis. Plant Research International.