Research output per year
Research output per year
Description
Formalin-fixed paraffin embedded (FFPE) tissues from colorectal cancer patients (n=14) and healthy controls (n=13) were obtained from pathology archives for 16S rRNA amplicon sequencing. The FFPE tissue collection includes n=14 colorectal cancer (CRC), n=14 normal adjacent (ADJ) and n=13 healthy control tissues. DNA extraction negatives consisted of blank (n=3) and water (n=3) controls that were concurrently processed with the tissues. Additional controls consisted of empty paraffin samples (n=6).
| Date made available | 27 Jun 2021 |
|---|---|
| Publisher | Erasmus University Medical Center |
Keywords
- Raw sequence reads
- Multispecies
- Medical
Accession numbers
- PRJNA741803
Research output
- 1 Article
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Technical challenges regarding the use of formalin-fixed paraffin embedded (FFPE) tissue specimens for the detection of bacterial alterations in colorectal cancer
Lam, S. Y., Ioannou, A., Konstanti, P., Visseren, T., Doukas, M., Peppelenbosch, M. P., Belzer, C. & Fuhler, G. M., 29 Oct 2021, In: BMC Microbiology. 21, 297.Research output: Contribution to journal › Article › Academic › peer-review
Open Access13 Citations (Scopus)
Datasets
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Formalin-fixed paraffin embedded colorectal cancer and healthy colonic tissue sample collection 2
Lam, S. Y. (Creator), Ioannou, N. (Creator), Konstanti, P. (Creator), Visseren, T. (Creator), Belzer, C. (Creator) & Fuhler, G. M. (Creator), Erasmus University Medical Center, 30 Jun 2021
https://www.ncbi.nlm.nih.gov/bioproject/PRJNA742764
Dataset