epiGBS2: Improvements and evaluation of highly demultiplexed, epiGBS-based RRBS

Fleur Gawehns (Creator)
Maarten Postuma (Creator)
Morgane van Antro (Netherlands Institute of Ecology (NIOO-KNAW) (Creator)
Adam Nunn (Creator)
Bernice Sepers (Netherlands Institute of Ecology (NIOO-KNAW) (Creator)
Samar Fatma (Creator)
Thomas van Gurp (Netherlands Institute of Ecology (NIOO-KNAW) (Creator)
Niels C.A.M. Wagemaker (Creator)
A.C. Mateman (Creator)
Slavica Milanovic-Ivanovic (Creator)
Ivo Groβe (Creator)
K. van Oers (Creator)
Philippine Vergeer (Creator)
Koen J.F. Verhoeven (Creator)

Dataset

Description

This dataset was create to test the performance capabilities of the epiGBS 2.0 pipeline. We created a epiGBS dataset containing 44 A.thaliana individuals from 6 different accessions.

Date made available	21 Sept 2021
Publisher	Netherlands Institute of Ecology (NIOO-KNAW)

Keywords

Raw sequence reads
Multispecies
Bioinformatic resources for eco-evo studies
Arabidopsis thaliana

Accession numbers

PRJNA764918

Access Dataset

https://www.ncbi.nlm.nih.gov/bioproject/PRJNA764918

1 Article

epiGBS2: Improvements and evaluation of highly multiplexed, epiGBS-based reduced representation bisulfite sequencing
Gawehns, F., Postuma, M., van Antro, M., Nunn, A., Sepers, B., Fatma, S., van Gurp, T. P., Wagemaker, N. C. A. M., Mateman, A. C., Milanovic-Ivanovic, S., Groβe, I., van Oers, K., Vergeer, P. & Verhoeven, K. J. F., Jul 2022, In: Molecular Ecology Resources. 22, 5, p. 2087-2104
Research output: Contribution to journal › Article › Academic › peer-review

Open Access
13 Citations (Scopus)

Cite this

Gawehns, F. (Creator), Postuma, M. (Creator), van Antro, M. (Creator), Nunn, A. (Creator), Sepers, B. (Creator), Fatma, S. (Creator), van Gurp, T. (Creator), Wagemaker, N. C. A. M. (Creator), Mateman, A. C. (Creator), Milanovic-Ivanovic, S. (Creator), Groβe, I. (Creator), van Oers, K. (Creator), Vergeer, P. (Creator), Verhoeven, K. J. F. (Creator) (21 Sept 2021). epiGBS2: Improvements and evaluation of highly demultiplexed, epiGBS-based RRBS. Netherlands Institute of Ecology (NIOO-KNAW).