Constraint based modeling in R using metabolic reconstruction databases

  • A.K. Gavai (Creator)
  • H. Hettinga (Creator)
  • J.A.M. Leunissen (Creator)

Dataset

Description

This package provides an interface to simulate metabolic reconstruction from the BiGG database(http://bigg.ucsd.edu/) and other metabolic reconstruction databases. The package facilitates flux balance analysis (FBA) and the sampling of feasible flux distributions. Metabolic networks and estimated fluxes can be visualized with hypergraphs.
Date made available14 Jul 2015
PublisherWageningen UR

Research Output

Using bioconductor package BiGGR for metabolic flux estimation based on gene expression changes in brain

Gavai, A. K., Supandi, F., Hettling, H., Murrell, P., Leunissen, J. A. M. & van Beek, J. H. G. M., 2015, In : PLoS ONE. 10, 3, 21 p., e0119016.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
  • 10 Citations (Scopus)

    Cite this

    Gavai, A. K. (Creator), Hettinga, H. (Creator), Leunissen, J. A. M. (Creator) (14 Jul 2015). Constraint based modeling in R using metabolic reconstruction databases. Wageningen UR.