Bos taurus strain:dairy beef (cattle): 1000 Bull Genomes Run 2, Bovine Whole Genome Sequence

Aniek Bouwman (Creator)
H.D. Daetwyler (Creator)
Amanda J. Chamberlain (Creator)
Carla Hurtado Ponce (Creator)
Mehdi Sargolzaei (Creator)
Flavio S. Schenkel (Creator)
Goutam Sahana (Creator)
Armelle Govignon-Gion (Creator)
Simon Boitard (Creator)
Marlies Dolezal (Creator)
Hubert Pausch (Creator)
Rasmus F. Brøndum (Creator)
Phil J. Bowman (Creator)
Bo Thomsen (Creator)
Bernt Guldbrandtsen (Creator)
Mogens S. Lund (Creator)
Bertrand Servin (Creator)
Dorian J. Garrick (Creator)
James M. Reecy (Creator)
Johanna Vilkki (Creator)
Alessandro Bagnato (Creator)
Min Wang (Creator)
Jesse L. Hoff (Creator)
Robert D. Schnabel (Creator)
Jeremy F. Taylor (Creator)
Anna A.E. Vinkhuyzen (Creator)
Frank Panitz (Creator)
Christian Bendixen (Creator)
Lars Erik Holm (Creator)
Birgit Gredler (Creator)
Chris Hozé (Creator)
Mekki Boussaha (Creator)
Marie Pierre Sanchez (Creator)
Dominique Rocha (Creator)
Aurelien Capitan (Creator)
Thierry Tribout (Creator)
Anne Barbat (Creator)
Pascal Croiseau (Creator)
Cord Drögemüller (Creator)
Vidhya Jagannathan (Creator)
Christy Vander Jagt (Creator)
John N. Crowley (Creator)
Anna Bieber (Creator)
Deirdre C. Purfield (Creator)
Donagh P. Berry (Creator)
Reiner Emmerling (Creator)
Kay Uwe Götz (Creator)
Mirjam Frischknecht (Creator)
Ingolf Russ (Creator)
Johann Sölkner (Creator)
Curtis P. van Tassell (Creator)
Ruedi Fries (Creator)
Paul Stothard (Creator)
Roel Veerkamp (Creator)
Didier Boichard (Creator)
Mike E. Goddard (Creator)
Ben J. Hayes (Creator)

Animal Breeding & Genomics

Dataset

Description

Whole genome sequence data (BAM format) of 234 bovine individuals aligned to UMD3.1. The aim of the study was to identify genetic variants (SNPs and indels) for downstream analysis such as imputation, GWAS, and detection of lethal recessives. Additional sequences for later 1000 bull genomes runs can be found at partners individual projects including PRJEB9343, PRJNA176557, PRJEB18113, PRNJA343262, PRJNA324822, PRJNA324270, PRJNA277147, PRJEB5462.

Date made available	18 Feb 2014
Publisher	Wageningen University & Research

Keywords

Bos taurus

Accession numbers

PRJNA238491

Access Dataset

https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA238491

3 Article

Genomic regions associated with muscularity in beef cattle differ in five contrasting cattle breeds
Doyle, J. L., Berry, D. P., Veerkamp, R. F., Carthy, T. R., Evans, R. D., Walsh, S. W. & Purfield, D. C., 30 Jan 2020, In: Genetics, selection, evolution : GSE. 52, 1, 2.
Research output: Contribution to journal › Article › Academic › peer-review

Open Access
33 Citations (Scopus)
Meta-analysis of genome-wide association studies for cattle stature identifies common genes that regulate body size in mammals
Bouwman, A. C., Daetwyler, H. D., Chamberlain, A. J., Ponce, C. H., Sargolzaei, M., Schenkel, F. S., Sahana, G., Govignon-Gion, A., Boitard, S., Dolezal, M., Pausch, H., Brøndum, R. F., Bowman, P. J., Thomsen, B., Guldbrandtsen, B., Lund, M. S., Servin, B., Garrick, D. J., Reecy, J., Vilkki, J., & 37 othersBagnato, A., Wang, M., Hoff, J. L., Schnabel, R. D., Taylor, J. F., Vinkhuyzen, A. A. E., Panitz, F., Bendixen, C., Holm, L. E., Gredler, B., Hozé, C., Boussaha, M., Sanchez, M. P., Rocha, D., Capitan, A., Tribout, T., Barbat, A., Croiseau, P., Drögemüller, C., Jagannathan, V., Vander Jagt, C., Crowley, J. J., Bieber, A., Purfield, D. C., Berry, D. P., Emmerling, R., Götz, K. U., Frischknecht, M., Russ, I., Sölkner, J., van Tassell, C. P., Fries, R., Stothard, P., Veerkamp, R. F., Boichard, D., Goddard, M. E. & Hayes, B. J., Apr 2018, In: Nature Genetics. 50, p. 362-367
Research output: Contribution to journal › Article › Academic › peer-review
214 Citations (Scopus)
Contribution of rare and low-frequency whole-genome sequence variants to complex traits variation in dairy cattle
Zhang, Q., Calus, M. P. L., Guldbrandtsen, B., Lund, M. S. & Sahana, G., 2017, In: Genetics, Selection, Evolution. 49, 1, 60.
Research output: Contribution to journal › Article › Academic › peer-review

Open Access
12 Citations (Scopus)

Cite this

Bouwman, A. C. (Creator), Daetwyler, H. D. (Creator), Chamberlain, A. J. (Creator), Ponce, C. H. (Creator), Sargolzaei, M. (Creator), Schenkel, F. S. (Creator), Sahana, G. (Creator), Govignon-Gion, A. (Creator), Boitard, S. (Creator), Dolezal, M. (Creator), Pausch, H. (Creator), Brøndum, R. F. (Creator), Bowman, P. J. (Creator), Thomsen, B. (Creator), Guldbrandtsen, B. (Creator), Lund, M. S. (Creator), Servin, B. (Creator), Garrick, D. J. (Creator), Reecy, J. M. (Creator), Vilkki, J. (Creator), Bagnato, A. (Creator), Wang, M. (Creator), Hoff, J. L. (Creator), Schnabel, R. D. (Creator), Taylor, J. F. (Creator), Vinkhuyzen, A. A. E. (Creator), Panitz, F. (Creator), Bendixen, C. (Creator), Holm, L. (Creator), Gredler, B. (Creator), Hozé, C. (Creator), Boussaha, M. (Creator), Sanchez, M. P. (Creator), Rocha, D. (Creator), Capitan, A. (Creator), Tribout, T. (Creator), Barbat, A. (Creator), Croiseau, P. (Creator), Drögemüller, C. (Creator), Jagannathan, V. (Creator), Vander Jagt, C. (Creator), Crowley, J. J. (Creator), Bieber, A. (Creator), Purfield, D. C. (Creator), Berry, D. P. (Creator), Emmerling, R. (Creator), Götz, K. U. (Creator), Frischknecht, M. (Creator), Russ, I. (Creator), Sölkner, J. (Creator), van Tassell, C. P. (Creator), Fries, R. (Creator), Stothard, P. (Creator), Veerkamp, R. F. (Creator), Boichard, D. (Creator), Goddard, M. E. (Creator), Hayes, B. J. (Creator) (18 Feb 2014). Bos taurus strain:dairy beef (cattle): 1000 Bull Genomes Run 2, Bovine Whole Genome Sequence. Wageningen University & Research.

Bos taurus strain:dairy beef (cattle): 1000 Bull Genomes Run 2, Bovine Whole Genome Sequence

Description

Keywords

Accession numbers

Access Dataset

Research output

Genomic regions associated with muscularity in beef cattle differ in five contrasting cattle breeds

Meta-analysis of genome-wide association studies for cattle stature identifies common genes that regulate body size in mammals

Contribution of rare and low-frequency whole-genome sequence variants to complex traits variation in dairy cattle

Cite this