Research output per year
Research output per year
Description
This repository contains the supplemental data for the "BiG-MAP: an automated pipeline to profile metabolic gene cluster abundance and expression in microbiomes" manuscript.
1) HOMD_genome_ids.txt: 1,440 Assembly ids of the HOMD genomes used (http://www.homd.org/)
2) Streptococcus_genome_ids.txt: 170 Streptococcus assembly ids
3) BiG-MAP_results_96_samples_gutSMASH_core.zip: BiG-MAP results using the 96 metagenomic oral samples in combination with the gutSMASH results run on the 1,440 HOMD genomes
4) BiG-MAP_results_96_samples_antiSMASH_whole.zip: BiG-MAP results using the 96 metagenomic oral samples in combination with the antiSMASH results run on the 170 Streptococcus genomes
5) Grinder simulated data tables containing genome's relative abundance
1) HOMD_genome_ids.txt: 1,440 Assembly ids of the HOMD genomes used (http://www.homd.org/)
2) Streptococcus_genome_ids.txt: 170 Streptococcus assembly ids
3) BiG-MAP_results_96_samples_gutSMASH_core.zip: BiG-MAP results using the 96 metagenomic oral samples in combination with the gutSMASH results run on the 1,440 HOMD genomes
4) BiG-MAP_results_96_samples_antiSMASH_whole.zip: BiG-MAP results using the 96 metagenomic oral samples in combination with the antiSMASH results run on the 170 Streptococcus genomes
5) Grinder simulated data tables containing genome's relative abundance
| Date made available | 15 Dec 2020 |
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| Publisher | Wageningen University |
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BIG-MAP: An automated pipeline to profile metabolic gene cluster abundance and expression in microbiomes
Andreu, V. P., Augustijn, H. E., van den Berg, K., van der Hooft, J. J. J., Fischbach, M. A. & Medema, M. H., 28 Sept 2021, In: mSystems. 6, 5, e00937-21.Research output: Contribution to journal › Article › Academic › peer-review
Open Access10 Citations (Scopus) -
The Biosynthetic Gene cluster Meta’omics abundance Profiler (BiG-MAP)
Augustijn, H. E., van den Berg, K. & Pascal Andreu, V., 2020Research output: Non-textual form › Software
Open Access
Datasets
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Pre-computed MGCs from human microbiome reference genomes
Andreu, V. P. (Creator), Augustijn, H. (Creator), van den Berg, K. (Creator), van der Hooft, J. (Creator), Fischbach, M. A. (Creator) & Medema, M. (Creator), Wageningen University, 26 Oct 2022
Dataset